Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AMD27_RS14440 Genome accession   NZ_CP015110
Coordinates   3005008..3007230 (+) Length   740 a.a.
NCBI ID   WP_067661789.1    Uniprot ID   A0A143G6X8
Organism   Acinetobacter sp. TGL-Y2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3000008..3012230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS14415 (AMD27_14415) - 3000042..3000881 (+) 840 WP_067661778.1 HlyC/CorC family transporter -
  AMD27_RS14420 (AMD27_14420) lnt 3000878..3002437 (+) 1560 WP_067661780.1 apolipoprotein N-acyltransferase -
  AMD27_RS14425 (AMD27_14425) - 3002542..3002877 (-) 336 WP_067661782.1 hypothetical protein -
  AMD27_RS14430 (AMD27_14430) gspG 3003170..3003607 (-) 438 WP_067661784.1 type II secretion system major pseudopilin GspG -
  AMD27_RS14435 (AMD27_14435) gspF 3003650..3004855 (-) 1206 WP_067661787.1 type II secretion system inner membrane protein GspF -
  AMD27_RS14440 (AMD27_14440) priA 3005008..3007230 (+) 2223 WP_067661789.1 primosomal protein N' Machinery gene
  AMD27_RS14445 (AMD27_14445) - 3007433..3009313 (+) 1881 WP_067661791.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  AMD27_RS14450 (AMD27_14450) - 3009364..3010239 (+) 876 WP_067661792.1 Hsp33 family molecular chaperone HslO -
  AMD27_RS14455 (AMD27_14455) - 3010579..3011547 (+) 969 WP_067661794.1 DnaJ C-terminal domain-containing protein -
  AMD27_RS14460 (AMD27_14460) - 3011560..3011898 (+) 339 WP_067661796.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84290.70 Da        Isoelectric Point: 8.6405

>NTDB_id=176720 AMD27_RS14440 WP_067661789.1 3005008..3007230(+) (priA) [Acinetobacter sp. TGL-Y2]
MTNITELSQAIYRVRVAVPVHLYDCFDYQVSAEEYSQIKMGSRVAVSFGRQNVVGIVTEKLSAESPIDPRFKLKNITELL
DDQPLINDTVLKLATWSAQYYQFPIGEVMHITLPTLLRQGKPYNLLARTWKVLDLDAEPRVKRSLKQLEAYKILKLHPQG
TLETILNLSGVETATLKAIEKKGLIQCQLEAQNFEPEPVQLAQMPLTANDEQKKAIQRILKDQKNYHAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIVLMHSGLNDAKRLQAWQYAQTGKASIILGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVAMYRAFLEKCPIILGSATPSIDSFHLAEQGKLTRMELNHRAGGASMPKIHL
IDLKIAKKQHGISEALIKEVQTRLDNKEQVLIFLNRRGYAPVLICESCAWQANCPHCDAHFTLHKKPYEHLHCHHCGTIN
RLPDACPQCHQNTLKPIGMGTAKVEESLNELFPEHKIIRVDRDSTSRVGSWQKIYDQIHKSEPMILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLIQKDYRAFAKETLKDRQMALL
PPCRYAVLLRCESKNQEDNQKFLTEMTELLRQHAGDLIDIWGPIPAPMERKAGRYQAHVVLLSLERAKLHFYLREWWQQV
LHYKPSGMKLTIDVDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=176720 AMD27_RS14440 WP_067661789.1 3005008..3007230(+) (priA) [Acinetobacter sp. TGL-Y2]
ATGACAAATATTACAGAATTAAGCCAAGCCATTTACCGCGTGCGGGTTGCTGTACCTGTACACCTGTATGATTGTTTTGA
TTATCAAGTGTCAGCCGAAGAATATTCACAAATAAAAATGGGTTCACGTGTTGCAGTGTCATTTGGCAGGCAAAATGTAG
TGGGTATCGTGACCGAAAAACTCAGTGCTGAGTCTCCGATTGACCCGCGCTTTAAACTGAAAAACATCACTGAACTTTTA
GATGATCAGCCCCTCATTAATGATACTGTGTTAAAACTTGCCACATGGTCAGCGCAGTATTACCAATTTCCCATTGGCGA
GGTCATGCATATTACGCTTCCCACTTTACTGCGCCAAGGCAAACCTTATAACTTATTGGCACGCACCTGGAAAGTGTTGG
ATCTCGATGCAGAGCCACGCGTGAAGCGCTCCTTAAAGCAACTTGAAGCTTATAAAATTTTAAAATTGCATCCACAAGGC
ACTTTAGAGACTATTTTAAATTTGAGTGGTGTGGAAACGGCGACCTTAAAAGCGATTGAAAAAAAAGGACTCATTCAGTG
TCAACTCGAGGCACAAAATTTTGAGCCTGAACCTGTGCAATTGGCACAAATGCCTTTAACCGCAAATGATGAACAAAAGA
AAGCTATTCAACGTATTTTAAAAGATCAGAAAAATTATCATGCGTTCTTGCTCGACGGTCTCACCGGTAGTGGTAAAACT
GAAGTGTATTTGCAGGTGATGCATGAGGTGTTAAAGCAAGGCAAACAGGTGCTGGTTTTGGTGCCTGAAATTGGTTTGAC
TCCACAAACCATCAGCCGTTTTCAATCACGCTTTCACTGCAACATAGTCCTGATGCATTCGGGTTTAAATGACGCTAAGC
GCTTACAAGCTTGGCAATATGCCCAAACGGGTAAAGCCTCTATTATTTTGGGAACGCGCTCTGCCATCTATACCCCCATG
CCGAATTTAGGCTTGATTATTTTAGATGAAGAACATGATTTATCGTTTAAACAACAAGAAGGGTTTCGTTATCACGCGCG
TGATGTTGCCATGTACCGTGCTTTTTTGGAAAAGTGTCCGATCATTTTAGGCTCAGCCACACCCAGCATTGACAGTTTTC
ATTTGGCTGAACAAGGCAAACTGACACGTATGGAGTTAAATCATCGTGCAGGTGGGGCAAGCATGCCGAAAATACATTTG
ATTGATTTAAAAATTGCCAAAAAACAACATGGGATCAGTGAAGCGCTGATTAAGGAAGTTCAAACGCGTTTAGATAATAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGGGGTTATGCCCCTGTGCTGATTTGTGAAAGTTGTGCTTGGCAAGCCAATT
GTCCACACTGTGATGCGCATTTTACTTTACATAAAAAACCCTACGAGCATTTACACTGTCATCACTGTGGCACCATTAAC
CGCCTACCTGATGCCTGTCCGCAGTGTCATCAAAATACATTAAAACCCATTGGTATGGGTACGGCAAAAGTCGAAGAAAG
TTTAAATGAGTTATTTCCAGAACATAAAATCATTCGAGTAGATCGTGATTCGACCAGTCGTGTCGGCAGTTGGCAAAAAA
TTTACGATCAGATTCATAAAAGTGAACCCATGATTTTATTGGGCACACAAATGCTGGCCAAGGGACATCACTTCCCTTAT
GTCACGCTGGTGGCGATTTTAGATATAGACTCAGGTTTACTCAGTGTGGACTTCCGTGCCACTGAACGTACGGCGCAGCT
CATCATTCAAGTGGCGGGACGTGCAGGACGAGGCGAGAAAAAAGGTGAAGTGTATTTACAAACCTTACGCCCAGATCATC
CACTGCTGAACACTTTAATACAAAAAGATTATCGGGCTTTTGCCAAAGAGACATTAAAAGACCGTCAAATGGCACTGCTT
CCACCGTGTCGTTATGCGGTTTTACTGCGCTGTGAATCCAAGAATCAAGAAGACAACCAAAAGTTCCTGACAGAAATGAC
TGAGTTACTCAGACAACATGCTGGAGATTTGATTGATATTTGGGGACCAATTCCTGCGCCTATGGAACGTAAGGCAGGAC
GCTATCAAGCGCATGTGGTGTTATTGTCTTTAGAGCGCGCAAAGTTGCATTTTTATCTACGTGAATGGTGGCAACAGGTT
TTGCATTACAAACCCTCTGGCATGAAGCTGACCATTGATGTAGACCCACAAGAGCTCAGCTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(209-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143G6X8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.024

100

0.712

Multiple sequence alignment