Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AMD27_RS00990 Genome accession   NZ_CP015110
Coordinates   229172..230737 (-) Length   521 a.a.
NCBI ID   WP_067655135.1    Uniprot ID   A0A145WM18
Organism   Acinetobacter sp. TGL-Y2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 224172..235737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD27_RS00975 (AMD27_00975) gpmI 224892..226445 (+) 1554 WP_067655122.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  AMD27_RS00980 (AMD27_00980) - 226469..227650 (+) 1182 WP_067655125.1 S41 family peptidase -
  AMD27_RS00985 (AMD27_00985) pilR 227714..229147 (-) 1434 WP_067655129.1 sigma-54-dependent transcriptional regulator Regulator
  AMD27_RS00990 (AMD27_00990) pilS 229172..230737 (-) 1566 WP_067655135.1 sensor histidine kinase Regulator
  AMD27_RS00995 (AMD27_00995) - 230756..231391 (-) 636 WP_067655138.1 response regulator -
  AMD27_RS01000 (AMD27_01000) - 231612..232667 (+) 1056 WP_150115737.1 serine hydrolase -
  AMD27_RS01005 (AMD27_01005) - 232696..233643 (-) 948 WP_067656902.1 IS30 family transposase -
  AMD27_RS01010 (AMD27_01010) thrC 233789..234928 (-) 1140 WP_067655143.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59150.55 Da        Isoelectric Point: 6.8677

>NTDB_id=176695 AMD27_RS00990 WP_067655135.1 229172..230737(-) (pilS) [Acinetobacter sp. TGL-Y2]
MTPTVSIPIYQTIYRLGTLYSSYRLIIALSLTLIFLLTIENQTEYYQYPKLYFYALLFYVGCTLVQSLALKYLPHAISKQ
ILALFAVDLIFLSVLTFALGGPNIAIGLLFVISVFAANFLLSKNQALFITLIAVICVVYQQFFGSLFADASLNNIGNSAF
LAFLFFVVHAIGQVSIQRFQLLESLNTHQSNELFQLQNINRYILEQIEVGYFVLDEQCKIIVSNPAACSLLGISPLYAHE
QFHLATFQPDLFHILKNTLLADGERFQFESPQSKYHVDVRVQNLIVPHQALTLLILEDAQKINQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFEHEQDEQKLLSNMIAKQAIRIDRIIKDTLALAKNKNTHTTRIQLQHFLPEMIRHDLNDVKN
NIRLDVQQDLVVHFDESQLSQVLVNLSRNAIRHNAADADTILLHAYRHQQMVHIDVIDYGKGIEKHELSQLFQPFFSTEI
NGTGLGLYLSHSLCQANQAKLSYVEQKQQGACFRIECPHIK

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=176695 AMD27_RS00990 WP_067655135.1 229172..230737(-) (pilS) [Acinetobacter sp. TGL-Y2]
ATGACGCCAACGGTATCTATACCTATTTATCAGACCATTTACCGTCTTGGCACATTGTACTCAAGCTATCGGCTGATCAT
TGCGCTCAGTCTCACCCTGATTTTCTTGCTCACTATAGAAAATCAAACTGAATATTATCAATACCCTAAACTTTATTTCT
ATGCGCTGCTGTTTTATGTCGGATGCACTCTGGTACAGAGCTTAGCGCTTAAATATTTACCGCATGCGATCAGCAAACAA
ATCTTAGCGCTATTTGCCGTTGACCTGATTTTTCTGAGCGTGCTCACCTTTGCTTTGGGTGGCCCCAATATTGCCATCGG
GCTGTTGTTTGTGATCTCAGTATTTGCAGCCAACTTTTTACTGAGCAAAAATCAAGCGTTGTTTATTACGTTGATCGCCG
TGATTTGTGTGGTTTACCAACAGTTTTTTGGCAGTCTTTTTGCAGATGCTAGTTTAAACAATATTGGTAATAGTGCCTTT
CTGGCCTTTTTGTTTTTTGTGGTGCATGCGATTGGTCAAGTCTCAATTCAACGCTTTCAATTGCTTGAGTCTTTAAATAC
CCATCAATCCAATGAATTATTCCAATTACAAAATATTAACCGCTATATTTTGGAGCAGATTGAAGTCGGTTATTTTGTAC
TAGACGAACAATGTAAAATTATTGTCAGCAACCCTGCCGCATGTTCTTTGCTGGGTATTTCTCCTTTATATGCGCATGAA
CAATTTCATTTGGCGACTTTCCAACCTGATTTATTTCACATTTTAAAAAATACGCTGTTGGCCGATGGCGAGCGCTTTCA
ATTCGAATCGCCGCAGTCGAAATACCATGTCGATGTCCGAGTACAAAACTTAATTGTGCCCCATCAAGCCCTGACCTTGT
TGATTTTAGAAGATGCACAAAAAATCAATCAGCAAGTTCAACAGTTAAAACTGGCAGCGCTGGGACAGCTTTCTGCCAGT
ATTGCGCATGAAATTCGCAACCCTTTGGCAGCGATTGTACAAGCGAATGAGTTGTTTGAGCATGAGCAAGATGAACAAAA
ATTATTAAGCAATATGATTGCTAAGCAAGCCATCCGCATTGATCGAATTATTAAAGATACCTTGGCGCTAGCGAAAAATA
AGAACACACATACTACGCGTATTCAGTTGCAACATTTTTTGCCTGAGATGATTCGACATGATTTAAATGACGTAAAAAAT
AATATTCGACTGGATGTGCAACAGGATCTCGTGGTTCATTTTGATGAGTCTCAGTTAAGCCAAGTCTTGGTGAATTTATC
ACGCAATGCGATTCGTCATAATGCAGCGGATGCGGATACGATTCTGCTTCATGCCTATCGCCATCAACAGATGGTTCATA
TTGATGTGATTGATTATGGAAAAGGGATTGAAAAACATGAACTCTCTCAGCTATTTCAGCCTTTTTTTAGTACCGAAATT
AATGGAACTGGTTTAGGATTGTATTTATCACATAGTCTGTGTCAGGCCAATCAGGCCAAACTCAGCTATGTCGAGCAAAA
ACAACAAGGGGCATGCTTCAGAATTGAATGCCCACATATAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A145WM18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.1

98.081

0.58

Multiple sequence alignment