Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS30790 Genome accession   NZ_CP018870
Coordinates   6805717..6806382 (-) Length   221 a.a.
NCBI ID   WP_030031644.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6800717..6811382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS30765 (BSL84_30765) - 6800751..6801197 (-) 447 WP_159393594.1 hypothetical protein -
  BSL84_RS30770 (BSL84_30770) - 6801301..6802536 (+) 1236 WP_075971694.1 hypothetical protein -
  BSL84_RS30775 (BSL84_30775) - 6803211..6803747 (+) 537 WP_159393595.1 SMI1/KNR4 family protein -
  BSL84_RS30780 (BSL84_30780) - 6803782..6804903 (-) 1122 WP_075971696.1 IS630 family transposase -
  BSL84_RS30785 (BSL84_30785) - 6805043..6805432 (+) 390 Protein_6071 transposase -
  BSL84_RS30790 (BSL84_30790) vraR 6805717..6806382 (-) 666 WP_030031644.1 response regulator transcription factor Regulator
  BSL84_RS30795 (BSL84_30795) - 6806379..6807575 (-) 1197 WP_045321091.1 sensor histidine kinase -
  BSL84_RS30800 (BSL84_30800) - 6807583..6808245 (-) 663 WP_079273361.1 DUF998 domain-containing protein -
  BSL84_RS36670 - 6808579..6808836 (-) 258 WP_199838770.1 hypothetical protein -
  BSL84_RS30810 (BSL84_30810) - 6808838..6808999 (+) 162 Protein_6076 HNH endonuclease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23567.06 Da        Isoelectric Point: 5.7775

>NTDB_id=176563 BSL84_RS30790 WP_030031644.1 6805717..6806382(-) (vraR) [Streptomyces sp. TN58]
MTIKVLLADDQALVRAGFSSLLARAEDIEVVGEAGTGDEAVRTARAVRPDVVLMDIRMPGTDGLTATGKIVADSELTGCR
VLVLTTFETDEYVFAALRAGASGFLTKEIEPEDLRQAVRSVAAGDALLSPGATRRVIEQFAHRPATPVDTAERLRVLTAR
EIEVTRLIATGLSNDQIAAQLVISPHTAKTHVTRAIAKLGVRDRAQLVILAYETGLVRVGS

Nucleotide


Download         Length: 666 bp        

>NTDB_id=176563 BSL84_RS30790 WP_030031644.1 6805717..6806382(-) (vraR) [Streptomyces sp. TN58]
ATGACGATCAAGGTACTTCTGGCCGACGACCAGGCCCTCGTACGGGCCGGATTCAGCAGCCTTCTCGCGCGCGCCGAGGA
CATCGAGGTCGTCGGCGAGGCCGGAACGGGTGACGAGGCCGTGCGCACGGCCCGCGCCGTCCGCCCTGATGTCGTCCTGA
TGGACATCCGCATGCCCGGTACCGACGGCCTCACCGCCACCGGGAAGATCGTGGCGGACTCCGAACTGACGGGCTGCCGG
GTCCTCGTGCTCACGACCTTCGAGACCGACGAGTATGTGTTCGCGGCTTTGCGGGCCGGCGCAAGCGGCTTCCTCACCAA
GGAGATCGAACCGGAAGACCTGCGTCAGGCCGTCCGGTCGGTGGCTGCCGGCGACGCACTGCTCTCCCCGGGCGCGACAC
GGCGGGTGATCGAGCAGTTCGCGCACCGCCCGGCGACACCCGTCGACACCGCAGAGCGTCTCCGCGTGCTCACCGCCCGG
GAAATCGAGGTGACCCGTCTGATCGCGACCGGCCTCTCCAACGACCAAATCGCCGCACAACTCGTCATCAGCCCGCACAC
CGCCAAGACCCATGTCACCCGCGCCATCGCCAAGCTCGGCGTCCGCGACCGCGCCCAGTTGGTCATCCTCGCCTATGAGA
CGGGCCTGGTCCGTGTCGGCAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.367

98.643

0.398
  degU Bacillus subtilis subsp. subtilis str. 168

37.118

100

0.385