Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS27095 Genome accession   NZ_CP018870
Coordinates   5996050..5996679 (-) Length   209 a.a.
NCBI ID   WP_030031753.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5991050..6001679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS27080 (BSL84_27080) - 5991715..5992326 (-) 612 WP_030028593.1 nucleotidyltransferase family protein -
  BSL84_RS27085 (BSL84_27085) - 5992591..5994051 (+) 1461 WP_324616549.1 PLP-dependent aminotransferase family protein -
  BSL84_RS27090 (BSL84_27090) - 5994225..5995952 (-) 1728 WP_075971326.1 PP2C family protein-serine/threonine phosphatase -
  BSL84_RS27095 (BSL84_27095) vraR 5996050..5996679 (-) 630 WP_030031753.1 response regulator Regulator
  BSL84_RS27100 (BSL84_27100) - 5996676..5997992 (-) 1317 WP_079273305.1 sensor histidine kinase -
  BSL84_RS27105 (BSL84_27105) - 5998126..5999241 (+) 1116 WP_075971327.1 ABC transporter permease -
  BSL84_RS27110 (BSL84_27110) - 5999238..6000008 (+) 771 WP_079273306.1 ABC transporter ATP-binding protein -
  BSL84_RS27115 (BSL84_27115) - 5999963..6001477 (-) 1515 WP_075971328.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22084.46 Da        Isoelectric Point: 6.4966

>NTDB_id=176559 BSL84_RS27095 WP_030031753.1 5996050..5996679(-) (vraR) [Streptomyces sp. TN58]
MTVRLLLADDHPVVRAGLRAVLDTEADFTVVAEAATAERAVELAAREQVDVVLMDLQFGPGMHGSEATALITARSGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGRSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKRLFLSQATVKSHLVHVYAKLGVESRTAAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=176559 BSL84_RS27095 WP_030031753.1 5996050..5996679(-) (vraR) [Streptomyces sp. TN58]
GTGACCGTCCGTCTCCTGCTCGCCGACGACCACCCCGTGGTCCGGGCGGGCCTGCGCGCGGTGCTGGACACCGAGGCGGA
CTTCACGGTGGTGGCCGAGGCGGCGACCGCCGAGCGGGCGGTGGAGCTGGCCGCCCGCGAACAGGTGGACGTGGTGCTGA
TGGACCTGCAATTCGGGCCCGGCATGCACGGCTCGGAGGCCACGGCACTGATCACGGCCCGCTCCGGCGCCCCGCGGGTG
CTGGTGCTGACCACCTACGACACGGACGCGGACATCCTTGCCGCGGTGGAGGCGGGCGCGTCGGGCTACCTGCTGAAGGA
CGCCCCGCCGGAGGAGCTGGCGGCCGCCGTACGGACGGCCGCGGCGGGCCGGTCGGCGCTGGCCCCGGCGGTGGCGCTGC
GGCTGATGGACCGGATGCGGACGCCGGCGGAGGCGCTGACGAAGCGGGAGCTGGAGGTGCTGCAGCTGGTGGCGGACGGC
CTGTCGAACCAGCAGATCTCCAAGCGCCTCTTCCTCAGCCAGGCGACGGTGAAGTCCCATCTGGTGCACGTCTACGCGAA
GCTGGGCGTCGAGTCCCGCACGGCGGCGGTGGCGGCGGCCGCCACCCGCCGCCTGATCCGCACGCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.619

100

0.378
  degU Bacillus subtilis subsp. subtilis str. 168

34.862

100

0.364

Multiple sequence alignment