Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS15120 Genome accession   NZ_CP018870
Coordinates   3352267..3352890 (+) Length   207 a.a.
NCBI ID   WP_030031022.1    Uniprot ID   A0ABZ1QDK7
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3347267..3357890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS15100 (BSL84_15100) - 3347760..3348335 (+) 576 WP_030031143.1 TerD family protein -
  BSL84_RS15105 (BSL84_15105) - 3348414..3349826 (-) 1413 WP_045323069.1 M1 family metallopeptidase -
  BSL84_RS15110 (BSL84_15110) - 3349859..3350419 (-) 561 WP_030031141.1 GlcG/HbpS family heme-binding protein -
  BSL84_RS15115 (BSL84_15115) - 3351041..3352270 (+) 1230 WP_075970538.1 sensor histidine kinase -
  BSL84_RS15120 (BSL84_15120) vraR 3352267..3352890 (+) 624 WP_030031022.1 response regulator Regulator
  BSL84_RS15125 (BSL84_15125) - 3352993..3353496 (+) 504 WP_030031021.1 hypothetical protein -
  BSL84_RS15130 (BSL84_15130) - 3353512..3354501 (-) 990 Protein_2992 glycoside hydrolase family 26 protein -
  BSL84_RS15135 (BSL84_15135) - 3354870..3355544 (-) 675 WP_051873242.1 pentapeptide repeat-containing protein -
  BSL84_RS15140 (BSL84_15140) - 3355600..3356073 (-) 474 WP_075970539.1 GNAT family N-acetyltransferase -
  BSL84_RS15150 (BSL84_15150) - 3356498..3357586 (+) 1089 WP_030029521.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21899.15 Da        Isoelectric Point: 5.5991

>NTDB_id=176523 BSL84_RS15120 WP_030031022.1 3352267..3352890(+) (vraR) [Streptomyces sp. TN58]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAAKLHPDVVLMDLQLGEGIDGVEATRRITALPQPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIHSAAQGRTTLSAPVASRVMAHMRGSRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLPS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=176523 BSL84_RS15120 WP_030031022.1 3352267..3352890(+) (vraR) [Streptomyces sp. TN58]
ATGACGACGATCCTGCTCTGCGACGACCACGTGGTGGTCCGCGCCGGCCTCCTGGCCCTCCTCGGCAGCGAACCCGACAT
CGAGGTCCTGGGTGAGGCGGGCAGCGGCGAGGAGGCGGTCGCCCTGGCCGCCAAGCTCCACCCGGACGTGGTCCTCATGG
ACCTCCAGCTCGGCGAGGGCATCGACGGCGTCGAGGCCACCCGCCGCATCACCGCGCTCCCGCAGCCCCCGCACGTCCTC
GTCCTCACCACCTACGACACGGACGCGGACATCACCCGGGCCATCGGCGCGGGCGCCACCGGCTACCTCCTCAAAGCGGA
ACGCCCCGAGGAGCTCTTCGCCGCCATCCACTCGGCCGCCCAGGGCCGCACCACCCTCTCCGCACCGGTCGCGAGCCGCG
TCATGGCCCACATGCGCGGCAGCCGCCCCACCCTCACCGACCGCGAACTCGACATCCTCGGGCAGCTCGCACGCGGCCTC
GGCAACCGCGACATCGCCCGCGCCCTGTTCATCAGCGAGGCCACCGTCAAAACCCACCTCGGGCGCATCTACGACAAGCT
CGGCGTCGACACCCGCGCCGGCGCCGTCTCCGTAGCGAAGGAACAACGCCTCCTCCCCTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.806

99.517

0.396
  degU Bacillus subtilis subsp. subtilis str. 168

35.484

100

0.372

Multiple sequence alignment