Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BSL84_RS10850 Genome accession   NZ_CP018870
Coordinates   2368771..2370504 (+) Length   577 a.a.
NCBI ID   WP_075970238.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2363771..2375504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS10820 (BSL84_10820) - 2364990..2366147 (+) 1158 WP_078848757.1 carboxylate-amine ligase -
  BSL84_RS10840 (BSL84_10840) - 2366770..2367075 (+) 306 WP_030030456.1 hypothetical protein -
  BSL84_RS10845 (BSL84_10845) - 2367171..2368619 (+) 1449 WP_075970237.1 FGGY family carbohydrate kinase -
  BSL84_RS10850 (BSL84_10850) rcrP 2368771..2370504 (+) 1734 WP_075970238.1 ABC transporter ATP-binding protein Regulator
  BSL84_RS10855 (BSL84_10855) rcrQ 2370501..2372423 (+) 1923 WP_045320741.1 ABC transporter ATP-binding protein Regulator
  BSL84_RS10860 (BSL84_10860) rpoS 2372518..2373570 (-) 1053 WP_030027846.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62440.30 Da        Isoelectric Point: 5.1691

>NTDB_id=176511 BSL84_RS10850 WP_075970238.1 2368771..2370504(+) (rcrP) [Streptomyces sp. TN58]
MLIRLLRTHLGPYRKPIAALVLLQLLQTSASLYLPTLNADIIDKGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGA
RTAAAVGRDIRGAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVRLSGV
LLAVVPVLGISVGAIVHRTRPLFRQLQDRLDTVNRVLREQITGNRVIRAFVRDDYEKERFREANADLTGVSLASGRLLAL
MFPTVIVVVNISSVAVIWFGAMRVDSGGMEVGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PAEPVRELTRRGLLELRGADFGYPGAESPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLARTVGMVPQKPYLFSGTIASNLRYGRPDAGDEELWHALEVAQAKEFVSALEGGLEAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVATIRDADRIIVLDEGQVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=176511 BSL84_RS10850 WP_075970238.1 2368771..2370504(+) (rcrP) [Streptomyces sp. TN58]
GTGCTCATACGACTTCTGCGGACCCACCTGGGCCCGTACCGCAAACCCATCGCGGCGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCAGCCTCTACCTGCCCACCCTGAACGCCGACATCATCGACAAGGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCACTGATGCTGGGCGTCTCGCTCGTCCAGCTCGTCTGCAACGTCGGAGCCGTCTACTACGGCGCC
CGCACGGCCGCGGCCGTCGGTCGCGACATCCGTGGCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGGGAGCTCGG
CCAGTTCGGCGCCCCGTCACTGATCACCCGTACGACGAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCGCGATGGCGCTCTCGCTGGACGTGCGTCTGTCGGGCGTC
CTGCTGGCCGTGGTGCCCGTACTCGGGATCTCCGTCGGCGCCATCGTCCACCGGACGCGGCCGCTGTTCCGCCAGCTGCA
GGACCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGGAACGCTTCCGGGAGGCCAACGCCGACCTCACCGGCGTCTCGCTGGCCTCGGGCCGGCTGCTGGCTCTG
ATGTTCCCGACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCGTCGACAGCGG
CGGTATGGAGGTCGGCCAGCTCACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGACACCGAGTCCAGCGTCGTCCCG
CCCGCCGAACCGGTGCGCGAACTCACCCGCCGCGGGCTCCTGGAGCTGCGCGGCGCCGACTTCGGCTACCCGGGCGCCGA
GTCCCCCGTCCTGCGCGGTGTGGACCTGGTGGCCCGTCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTGGGCCTGGTCCCGCGGCTGTTCGACGCGACCGGCGGCGAGGTACTGGTCGACGGCGAGGACGTACGC
CGACTCGACCCGGAACTGCTGGCGAGGACGGTCGGCATGGTGCCGCAGAAGCCGTACCTCTTCTCCGGCACCATCGCCTC
CAACCTGCGCTACGGACGCCCGGACGCCGGCGACGAAGAGCTGTGGCATGCGCTGGAGGTCGCCCAGGCGAAGGAGTTCG
TCTCGGCGCTGGAGGGCGGCCTGGAGGCCCCCGTGACCCAGGGCGGGACGAACGTCTCCGGCGGCCAGCGCCAGCGACTG
GCCATCGCCCGCACGCTGGTCCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCGCGACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGGCAGGTCGTGGGCGAGGGACGCCACCACGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.32

97.574

0.393