Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   BSL84_RS10860 Genome accession   NZ_CP018870
Coordinates   2372518..2373570 (-) Length   350 a.a.
NCBI ID   WP_030027846.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2367518..2378570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS10850 (BSL84_10850) rcrP 2368771..2370504 (+) 1734 WP_075970238.1 ABC transporter ATP-binding protein Regulator
  BSL84_RS10855 (BSL84_10855) rcrQ 2370501..2372423 (+) 1923 WP_045320741.1 ABC transporter ATP-binding protein Regulator
  BSL84_RS10860 (BSL84_10860) rpoS 2372518..2373570 (-) 1053 WP_030027846.1 RNA polymerase sigma factor Regulator
  BSL84_RS10865 (BSL84_10865) - 2374047..2376122 (-) 2076 WP_030027845.1 molybdopterin oxidoreductase family protein -
  BSL84_RS10870 (BSL84_10870) - 2376190..2376552 (-) 363 WP_234363443.1 hypothetical protein -
  BSL84_RS10875 (BSL84_10875) - 2376702..2377415 (-) 714 WP_045320743.1 SanA/YdcF family protein -
  BSL84_RS10880 (BSL84_10880) - 2377802..2378524 (+) 723 WP_075970239.1 sirohydrochlorin chelatase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39406.90 Da        Isoelectric Point: 5.2551

>NTDB_id=176513 BSL84_RS10860 WP_030027846.1 2372518..2373570(-) (rpoS) [Streptomyces sp. TN58]
MQTRTLTVNASESSEAVAVDEEPEVLELIEPVPVQRRRDSDGSGGGSGPSADLFRQYLREIGRIPLLTAAEEVDLARRVE
AGLFAEEKLGNTPDLDSQLALDLDRLVVMGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYA
RGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTAEEVAHHLELTPERVLEVLRLAQ
EPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFFLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGV
TRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=176513 BSL84_RS10860 WP_030027846.1 2372518..2373570(-) (rpoS) [Streptomyces sp. TN58]
GTGCAGACCCGGACCCTGACCGTGAACGCGAGCGAGTCCTCGGAGGCCGTCGCCGTGGACGAAGAGCCCGAGGTACTGGA
GCTCATCGAGCCGGTACCTGTGCAGCGCAGGCGGGACAGCGACGGGAGCGGGGGCGGATCCGGACCCTCCGCCGACCTGT
TCCGCCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCACCGCCGCGGAGGAGGTGGACCTGGCACGGCGCGTCGAA
GCCGGACTGTTCGCCGAGGAGAAGCTCGGCAACACCCCCGACCTCGACTCCCAGCTCGCCCTCGACCTCGACCGGCTCGT
CGTCATGGGTCGCATGGCCAAACGCCGGCTCATCGAGTCGAACCTGCGCCTCGTCGTCTCCGTCGCGAAGCGGTACGTCG
GCCGCGGGCTCACCATGCTCGACCTGGTGCAGGAGGGGAACCTCGGGCTGATCCGGGCCGTTGAGAAGTTCGACTACGCC
CGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCGATGTCCCGGGCCCTCGCCGACCAGGCCCGGAC
CATCCGCGTGCCCGTCCACGTCGTCGAGCTGATCAACCGCGTCGTGCGCGTCCAGCGCCGCATGCTCCAGGAACGCGGCT
ACGAGCCCACCGCCGAAGAGGTCGCCCACCACCTGGAGCTGACCCCCGAGCGCGTACTCGAAGTGCTGCGCCTCGCCCAG
GAGCCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGACGTCGCCCTCGGCGACCTCATCGAGGACGGGGACGCAGC
CTCCCCCGTGGAGTCGGCCGCCTTCTTCCTGCTGCGCGAGCACCTGGAGGCGGTCCTGTCGACCCTCGGCGAACGTGAGC
GCAAGGTCGTGCAGTTGCGCTACGGCCTCGCGGACGGACGCCCCCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTG
ACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACCCTCAACAAGCTGCGCGACCACGCCTTCGCCGACCAGCTGCGCGG
CTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(117-186)

Sigma-70 region 3 (Sigma70_r3)

(196-272)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(52-85)

Sigma-70, region 4 (Sigma70_r4)

(285-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.369

83.714

0.371