Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS07810 Genome accession   NZ_CP018870
Coordinates   1714242..1714904 (-) Length   220 a.a.
NCBI ID   WP_030031036.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1709242..1719904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS07785 (BSL84_07785) - 1709998..1710426 (-) 429 WP_030028989.1 NfeD family protein -
  BSL84_RS07790 (BSL84_07790) - 1710559..1711353 (-) 795 WP_030028988.1 ABC transporter ATP-binding protein -
  BSL84_RS07795 (BSL84_07795) - 1711487..1712260 (+) 774 WP_045324356.1 hypothetical protein -
  BSL84_RS07800 (BSL84_07800) - 1712691..1713677 (-) 987 WP_107484754.1 beta-propeller fold lactonase family protein -
  BSL84_RS07805 (BSL84_07805) - 1713847..1714092 (-) 246 WP_045322296.1 chaplin -
  BSL84_RS07810 (BSL84_07810) vraR 1714242..1714904 (-) 663 WP_030031036.1 response regulator Regulator
  BSL84_RS07815 (BSL84_07815) - 1714897..1716045 (-) 1149 WP_107484893.1 GAF domain-containing sensor histidine kinase -
  BSL84_RS07820 (BSL84_07820) - 1716240..1716995 (+) 756 WP_075970063.1 SDR family NAD(P)-dependent oxidoreductase -
  BSL84_RS07825 (BSL84_07825) - 1716992..1718233 (+) 1242 WP_079273146.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  BSL84_RS07830 (BSL84_07830) - 1718530..1719222 (+) 693 WP_045322299.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23839.14 Da        Isoelectric Point: 5.6874

>NTDB_id=176505 BSL84_RS07810 WP_030031036.1 1714242..1714904(-) (vraR) [Streptomyces sp. TN58]
MADSTGRSGGRIRVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDVKMPGTDGIEALRRLG
ESANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAAAIRSVRAGHVLLQPEVAHALLSQDDQNSPAGRPGSLT
DREREVLCLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGIAV

Nucleotide


Download         Length: 663 bp        

>NTDB_id=176505 BSL84_RS07810 WP_030031036.1 1714242..1714904(-) (vraR) [Streptomyces sp. TN58]
GTGGCTGACAGCACCGGCCGAAGCGGCGGCCGTATCCGTGTCCTGCTGGTGGACGACCACCAGGTGGTCCGGCGGGGCCT
GCGCACCTTCCTGGAGGTCCAGGAGGACATCGAGGTCGTCGGGGAGGCCTCCGACGGCGAGGAGGGCATCGCCCGCGCCG
AGGAGCTGCGGCCCGACGTGATCCTGATGGACGTGAAGATGCCGGGCACCGACGGCATCGAGGCCCTGCGCCGGCTCGGC
GAGTCGGCGAACCCGGCGCGGGTCCTGATCGTCACCAGCTTCACGGAGCAGCGGACCGTGGTCCCGGCCCTGCGCGCCGG
CGCGGCGGGATACGTCTACAAGGACATCGACCCCGACGCCCTGGCCGCGGCCATCCGCTCCGTCCGCGCGGGCCACGTCC
TGCTCCAGCCGGAGGTGGCCCACGCCCTGCTCTCCCAGGACGACCAGAACTCCCCGGCGGGCCGGCCCGGCTCGCTGACG
GACCGCGAGCGGGAGGTCCTCTGCCTCATCGCGGACGGCCGCTCCAACCGGGAGATCGCCCGCGCCCTGGTGCTGTCCGA
GAAGACGGTCAAGACCCACGTCTCGAACATCCTGATGAAGCTGGACCTTTCCGACCGGACCCAGGCCGCGTTGTGGGCGG
TCAGGCACGGAATCGCCGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-126)

Bacterial regulatory proteins, luxR family (GerE)

(158-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.411

94.091

0.427
  degU Bacillus subtilis subsp. subtilis str. 168

38.739

100

0.391