Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSL84_RS05075 Genome accession   NZ_CP018870
Coordinates   1115968..1116618 (+) Length   216 a.a.
NCBI ID   WP_030026944.1    Uniprot ID   -
Organism   Streptomyces sp. TN58     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110968..1121618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL84_RS05050 (BSL84_05050) - 1111414..1112397 (-) 984 WP_078848800.1 tetratricopeptide repeat protein -
  BSL84_RS05055 (BSL84_05055) - 1112509..1112946 (-) 438 WP_075969900.1 hypothetical protein -
  BSL84_RS05060 (BSL84_05060) - 1112987..1113736 (-) 750 WP_030026941.1 ABC transporter permease -
  BSL84_RS05065 (BSL84_05065) - 1113765..1114676 (-) 912 WP_030026942.1 ABC transporter ATP-binding protein -
  BSL84_RS05070 (BSL84_05070) - 1114785..1115963 (+) 1179 WP_075969901.1 sensor histidine kinase -
  BSL84_RS05075 (BSL84_05075) vraR 1115968..1116618 (+) 651 WP_030026944.1 response regulator Regulator
  BSL84_RS05080 (BSL84_05080) - 1116727..1117884 (+) 1158 WP_030026945.1 ROK family transcriptional regulator -
  BSL84_RS05085 (BSL84_05085) - 1118012..1118779 (-) 768 WP_045321013.1 GntR family transcriptional regulator -
  BSL84_RS05090 (BSL84_05090) - 1119073..1119948 (+) 876 WP_037660958.1 alpha/beta fold hydrolase -
  BSL84_RS05095 (BSL84_05095) - 1120085..1121536 (+) 1452 WP_075969902.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23198.84 Da        Isoelectric Point: 4.8419

>NTDB_id=176499 BSL84_RS05075 WP_030026944.1 1115968..1116618(+) (vraR) [Streptomyces sp. TN58]
MPVTVLLVDDEPLVRAGLRAVLDAQPDIEVVGEAADGASVIPLVRQLRPDVVAMDVRMPLLDGIEATRAVLRTVDSPPKI
LVVTTFENDEYVYQALRAGADGFLLKRAKPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRQARAVLERAALTEREEAV
LRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVITAYESGFVSPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=176499 BSL84_RS05075 WP_030026944.1 1115968..1116618(+) (vraR) [Streptomyces sp. TN58]
ATGCCGGTTACCGTTCTGCTCGTCGACGACGAACCCCTGGTCCGCGCGGGTCTGCGCGCCGTTCTGGACGCCCAGCCCGA
CATCGAGGTGGTGGGTGAAGCCGCCGACGGCGCCTCCGTGATCCCGCTCGTACGGCAGCTGCGGCCGGACGTCGTGGCCA
TGGACGTGCGGATGCCGCTGCTCGACGGGATCGAGGCCACCCGCGCGGTGCTGCGGACCGTGGACTCCCCGCCGAAGATC
CTCGTGGTGACCACCTTCGAGAACGACGAGTACGTCTACCAGGCGCTGCGGGCCGGAGCGGACGGCTTCCTCCTGAAGCG
GGCCAAGCCTTCGGAGATCGTCCACGCCGTACGGCTGGTGGCGGAGGGCGAGACGCTGCTCTTCCCGGCGGCCGTACGGG
CGCTGGCGGCGGAGTACGGCAACCGGCAGGCGCGGGCGGTGCTGGAGCGGGCCGCCCTGACCGAGCGGGAGGAGGCGGTC
CTGCGGCTCATGGCGCGGGGACTCACCAACGTGGAGATCGCGTCCGAGCTCATCGTCGGGACGGAAACGGTGAAGTCGCA
TGTCAGTGCCATCCTGGCGAAGCTGGGGGCGCGGGACCGGACCCAGGCGGTGATCACGGCGTACGAGTCGGGCTTCGTCT
CCCCCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.589

99.074

0.412
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366