Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A4G16_RS00165 | Genome accession | NZ_CP015030 |
| Coordinates | 29994..30551 (+) | Length | 185 a.a. |
| NCBI ID | WP_165888176.1 | Uniprot ID | A0A6G8JFB3 |
| Organism | Mannheimia granulomatis strain B 234/94 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 24994..35551
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4G16_RS00145 (A4G16_00140) | - | 25516..26673 (+) | 1158 | WP_165888172.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A4G16_RS00150 (A4G16_00145) | - | 27074..27823 (+) | 750 | WP_165888173.1 | MipA/OmpV family protein | - |
| A4G16_RS00155 (A4G16_00150) | - | 27961..28737 (+) | 777 | WP_165888174.1 | MerR family transcriptional regulator | - |
| A4G16_RS00160 (A4G16_00155) | - | 28799..29491 (-) | 693 | WP_165888175.1 | CPBP family intramembrane glutamic endopeptidase | - |
| A4G16_RS00165 (A4G16_00160) | pilF | 29994..30551 (+) | 558 | WP_165888176.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A4G16_RS00170 (A4G16_00165) | - | 30548..32884 (+) | 2337 | WP_165888177.1 | Tex family protein | - |
| A4G16_RS00175 (A4G16_00170) | - | 33024..33845 (-) | 822 | WP_165888178.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| A4G16_RS00180 (A4G16_00175) | - | 33847..34410 (-) | 564 | WP_165888179.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 185 a.a. Molecular weight: 21068.89 Da Isoelectric Point: 8.0879
>NTDB_id=176292 A4G16_RS00165 WP_165888176.1 29994..30551(+) (pilF) [Mannheimia granulomatis strain B 234/94]
MFAKFFRKITACAAILLLAACSSNQEVSSESAFNRSEAVKARINLALAYLDQNDFPKAKQNIDKALAHDEKDYLPYSVLA
YYYQQTGEVENAEKAYQQALNLSKSRPDVLNNYGTFLCKQGQFQQAYQQFEKAIQSPKPYYHQADSLENIILCAKKEPNP
QKVIETLTQLEKLDKARANLLKENQ
MFAKFFRKITACAAILLLAACSSNQEVSSESAFNRSEAVKARINLALAYLDQNDFPKAKQNIDKALAHDEKDYLPYSVLA
YYYQQTGEVENAEKAYQQALNLSKSRPDVLNNYGTFLCKQGQFQQAYQQFEKAIQSPKPYYHQADSLENIILCAKKEPNP
QKVIETLTQLEKLDKARANLLKENQ
Nucleotide
Download Length: 558 bp
>NTDB_id=176292 A4G16_RS00165 WP_165888176.1 29994..30551(+) (pilF) [Mannheimia granulomatis strain B 234/94]
ATGTTTGCAAAATTTTTTAGAAAAATAACCGCTTGTGCTGCTATTTTATTATTAGCAGCTTGTTCTTCTAACCAAGAAGT
ATCTTCCGAATCAGCATTTAATCGCTCGGAAGCTGTAAAAGCCCGAATCAATCTTGCTTTAGCTTATTTAGATCAAAACG
ATTTCCCTAAAGCGAAACAGAATATTGATAAAGCCCTTGCTCACGATGAAAAAGATTATTTGCCTTACTCGGTACTTGCT
TACTATTACCAACAAACAGGTGAGGTAGAAAATGCAGAAAAAGCGTATCAGCAGGCCTTAAATTTAAGCAAAAGTCGTCC
TGACGTGCTGAATAATTACGGCACCTTTTTGTGTAAACAAGGTCAATTTCAACAGGCTTATCAACAATTTGAAAAAGCGA
TACAAAGCCCTAAGCCTTATTATCATCAAGCCGATAGTTTAGAAAATATTATTCTGTGTGCAAAAAAAGAGCCCAATCCG
CAGAAAGTGATCGAAACATTAACCCAGCTCGAAAAATTAGATAAAGCTCGAGCAAATTTATTGAAGGAAAATCAATGA
ATGTTTGCAAAATTTTTTAGAAAAATAACCGCTTGTGCTGCTATTTTATTATTAGCAGCTTGTTCTTCTAACCAAGAAGT
ATCTTCCGAATCAGCATTTAATCGCTCGGAAGCTGTAAAAGCCCGAATCAATCTTGCTTTAGCTTATTTAGATCAAAACG
ATTTCCCTAAAGCGAAACAGAATATTGATAAAGCCCTTGCTCACGATGAAAAAGATTATTTGCCTTACTCGGTACTTGCT
TACTATTACCAACAAACAGGTGAGGTAGAAAATGCAGAAAAAGCGTATCAGCAGGCCTTAAATTTAAGCAAAAGTCGTCC
TGACGTGCTGAATAATTACGGCACCTTTTTGTGTAAACAAGGTCAATTTCAACAGGCTTATCAACAATTTGAAAAAGCGA
TACAAAGCCCTAAGCCTTATTATCATCAAGCCGATAGTTTAGAAAATATTATTCTGTGTGCAAAAAAAGAGCCCAATCCG
CAGAAAGTGATCGAAACATTAACCCAGCTCGAAAAATTAGATAAAGCTCGAGCAAATTTATTGAAGGAAAATCAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
64.171 |
100 |
0.649 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
47.674 |
92.973 |
0.443 |