Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | A4G17_RS04720 | Genome accession | NZ_CP015029 |
| Coordinates | 966919..967467 (+) | Length | 182 a.a. |
| NCBI ID | WP_123957218.1 | Uniprot ID | A0AAE6X5W1 |
| Organism | Frederiksenia canicola strain HPA 21 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 961919..972467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4G17_RS04685 (A4G17_04640) | - | 962828..963157 (+) | 330 | WP_123957221.1 | YbaB/EbfC family nucleoid-associated protein | - |
| A4G17_RS04695 (A4G17_04650) | gltX | 963410..964849 (-) | 1440 | WP_123957220.1 | glutamate--tRNA ligase | - |
| A4G17_RS04715 (A4G17_04670) | - | 965599..966759 (+) | 1161 | WP_123957219.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| A4G17_RS04720 (A4G17_04675) | pilF | 966919..967467 (+) | 549 | WP_123957218.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| A4G17_RS04725 (A4G17_04680) | - | 967487..967870 (-) | 384 | WP_123957274.1 | SufE family protein | - |
| A4G17_RS04730 (A4G17_04685) | clpP | 967983..968573 (+) | 591 | WP_123957217.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| A4G17_RS04735 (A4G17_04690) | clpX | 968573..969823 (+) | 1251 | WP_123957216.1 | ATP-dependent protease ATP-binding subunit ClpX | - |
| A4G17_RS04740 (A4G17_04695) | lpxK | 970149..971147 (+) | 999 | WP_123957215.1 | tetraacyldisaccharide 4'-kinase | - |
| A4G17_RS04745 (A4G17_04700) | - | 971128..971289 (+) | 162 | WP_123957214.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20759.51 Da Isoelectric Point: 8.4338
>NTDB_id=176278 A4G17_RS04720 WP_123957218.1 966919..967467(+) (pilF) [Frederiksenia canicola strain HPA 21]
MKFAKLFQNLTACLLALWLSGCATQSPPEQAGFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALEHGPKDYLPHSVLA
YYFQQIGEPSNAEKAYQQALTLSENRPDVMNNYGTFLCKQGKFDAAYQQFDQALQSKQPYYYQADTLENIVLCADKQPNL
NRKNNALAQLEKWDSERARKLK
MKFAKLFQNLTACLLALWLSGCATQSPPEQAGFNRSEAVKARINLALAYLEQNDFPKAKQNIDKALEHGPKDYLPHSVLA
YYFQQIGEPSNAEKAYQQALTLSENRPDVMNNYGTFLCKQGKFDAAYQQFDQALQSKQPYYYQADTLENIVLCADKQPNL
NRKNNALAQLEKWDSERARKLK
Nucleotide
Download Length: 549 bp
>NTDB_id=176278 A4G17_RS04720 WP_123957218.1 966919..967467(+) (pilF) [Frederiksenia canicola strain HPA 21]
ATGAAATTTGCAAAACTTTTTCAAAATCTGACCGCTTGTTTGCTAGCTCTCTGGCTCTCAGGTTGTGCTACGCAAAGCCC
GCCAGAGCAAGCTGGGTTTAACCGCAGTGAAGCGGTTAAAGCTCGTATCAATCTTGCCTTGGCTTATCTGGAACAGAATG
ACTTTCCAAAAGCCAAGCAAAATATCGACAAAGCTCTTGAGCACGGCCCAAAAGATTATCTGCCGCATTCTGTCCTTGCC
TACTATTTTCAGCAAATTGGCGAGCCAAGCAATGCCGAAAAAGCCTACCAACAAGCCTTAACGTTGAGTGAAAATCGCCC
TGATGTGATGAATAATTACGGCACATTTTTGTGTAAGCAGGGCAAATTTGATGCGGCTTACCAACAATTTGACCAAGCGT
TGCAAAGCAAGCAGCCTTATTATTATCAAGCTGACACTTTAGAAAATATCGTGCTGTGTGCTGATAAACAACCGAATCTA
AACAGAAAAAATAATGCCTTAGCCCAGTTAGAAAAGTGGGACAGCGAACGAGCAAGAAAGCTAAAGTAA
ATGAAATTTGCAAAACTTTTTCAAAATCTGACCGCTTGTTTGCTAGCTCTCTGGCTCTCAGGTTGTGCTACGCAAAGCCC
GCCAGAGCAAGCTGGGTTTAACCGCAGTGAAGCGGTTAAAGCTCGTATCAATCTTGCCTTGGCTTATCTGGAACAGAATG
ACTTTCCAAAAGCCAAGCAAAATATCGACAAAGCTCTTGAGCACGGCCCAAAAGATTATCTGCCGCATTCTGTCCTTGCC
TACTATTTTCAGCAAATTGGCGAGCCAAGCAATGCCGAAAAAGCCTACCAACAAGCCTTAACGTTGAGTGAAAATCGCCC
TGATGTGATGAATAATTACGGCACATTTTTGTGTAAGCAGGGCAAATTTGATGCGGCTTACCAACAATTTGACCAAGCGT
TGCAAAGCAAGCAGCCTTATTATTATCAAGCTGACACTTTAGAAAATATCGTGCTGTGTGCTGATAAACAACCGAATCTA
AACAGAAAAAATAATGCCTTAGCCCAGTTAGAAAAGTGGGACAGCGAACGAGCAAGAAAGCTAAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
65.957 |
100 |
0.681 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
45.93 |
94.505 |
0.434 |