Detailed information NTG0176253

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BTR42_RS12385
• Genome accession: NZ_CP018822
• Coordinates: 2478368..2479462 (+)
• Length: 364 a.a.
• NCBI ID: WP_077497983.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus subsp. gallolyticus DSM 16831
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2473368..2484462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTR42_RS12345 (BTR42_12110)	-	2473457..2473651 (-)	195	WP_077497976.1	hypothetical protein	-
BTR42_RS12350 (BTR42_12115)	-	2473648..2473965 (-)	318	WP_077497978.1	hypothetical protein	-
BTR42_RS12355 (BTR42_12120)	-	2474254..2474781 (-)	528	WP_077497979.1	Bro-N domain-containing protein	-
BTR42_RS12360 (BTR42_12125)	-	2474839..2475045 (-)	207	WP_061458754.1	helix-turn-helix transcriptional regulator	-
BTR42_RS12365 (BTR42_12130)	-	2475170..2475952 (+)	783	WP_077497980.1	helix-turn-helix domain-containing protein	-
BTR42_RS12370 (BTR42_12135)	-	2476247..2476456 (+)	210	WP_077497981.1	hypothetical protein	-
BTR42_RS12375 (BTR42_12140)	-	2476712..2477854 (+)	1143	WP_077497982.1	tyrosine-type recombinase/integrase	-
BTR42_RS12380 (BTR42_12145)	yaaA	2477988..2478365 (+)	378	WP_039692637.1	S4 domain-containing protein YaaA	-
BTR42_RS12385 (BTR42_12150)	recF	2478368..2479462 (+)	1095	WP_077497983.1	DNA replication/repair protein RecF	Machinery gene
BTR42_RS12390 (BTR42_12155)	-	2479525..2480391 (-)	867	WP_074582177.1	GRP family sugar transporter	-
BTR42_RS12395 (BTR42_12160)	guaB	2480631..2482112 (-)	1482	WP_009855215.1	IMP dehydrogenase	-
BTR42_RS12400 (BTR42_12165)	trpS	2482373..2483395 (-)	1023	WP_074658526.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41747.80 Da
• Isoelectric Point: 6.9437

>NTDB_id=176253 BTR42_RS12385 WP_077497983.1 2478368..2479462(+) (recF) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDAKELLVSGILQRSSGT
VPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQR
NAYLKTAEKVDTDFLAVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIHYLSSVSFQEKDDIKPNFLK
ALQKNHQRDIFKKNTSVGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKTVTGDYPILLLDDVMSELDNYRQ
TELLKMIIDKNVQTFITTTSLDHLSQLPDELKIFTVNQGNIQEN

Nucleotide

• Length: 1095 bp

>NTDB_id=176253 BTR42_RS12385 WP_077497983.1 2478368..2479462(+) (recF) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGTGGATTCAAAAAATAACGTTAAAAAATTATCGTAACTATCTGACTAGTGAGCTTGAATTTTCTCCTGGACTTAATGT
TTTCATCGGAAAAAACGCTCAAGGAAAGACAAATTTCTTAGAAGCAATTTATTTCCTTTCTCTTACCCGCAGCCACCGCA
CACGAACAGACAAAGAGTTGATTCATTTTGATGCCAAAGAACTTCTGGTTTCTGGTATTTTACAACGTTCAAGTGGTACT
GTTCCTTTAGATATTAGTCTTTCAAGTAAGGGACGTGTTACAAAAGTTAATCATCTAAAACAAGCTAAGTTATCAGACTA
TATTGGTGTAATGACCGTTGTTCTTTTTGCACCTGAAGATTTACAACTCATCAAAGGCGCTCCAAGCCTTCGTCGAAAAT
TTATTGACATTGATTTAGGGCAAATAAAGCCGATTTATTTAGCTGATTTGTCTAATTATAACCACGTGCTAAAACAGCGT
AATGCTTATCTTAAAACGGCTGAAAAAGTTGATACTGATTTTTTAGCTGTGCTTGATGAGCAATTAGCTGATTTTGGTAG
CCGTGTCATGGAACATCGTTTAGATTTCATTTCTAATTTAGAAAAAGAAGCCGACCGCTATCATTATGCCATTTCAAACG
GCATTGAACATCTTAGTATCCATTATCTGTCATCTGTTTCCTTCCAAGAAAAGGATGACATTAAGCCAAATTTCTTAAAA
GCTTTACAAAAAAATCATCAGCGTGATATTTTCAAAAAAAATACAAGTGTTGGTCCCCACCGTGATGATTTAGAATTTTT
CATCAATGATATGCCAGCAAATTTTGGCAGCCAAGGTCAGCACCGTAGCCTAATCTTATCACTAAAAATGGCTGAAATTG
AGTTAATAAAAACAGTAACTGGTGATTATCCTATTTTACTTTTAGATGATGTCATGAGCGAGCTTGATAATTACAGACAA
ACCGAACTCTTAAAAATGATTATTGATAAAAACGTTCAAACCTTCATTACAACAACAAGCCTCGACCACCTATCACAGCT
TCCGGACGAGTTAAAAATCTTTACAGTTAATCAAGGTAACATTCAAGAAAATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	64.835	100	0.648
recF	Bacillus subtilis subsp. subtilis str. 168	46.705	95.879	0.448