Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BTV20_RS07760 Genome accession   NZ_CP018805
Coordinates   1685351..1686058 (-) Length   235 a.a.
NCBI ID   WP_075294057.1    Uniprot ID   A0A9Q6Z032
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680351..1691058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS07730 (BTV20_07715) sodA 1680658..1681287 (+) 630 WP_075294053.1 superoxide dismutase [Mn] -
  BTV20_RS07735 (BTV20_07720) hpt 1681416..1681955 (-) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  BTV20_RS07740 (BTV20_07725) raiA 1682159..1682476 (-) 318 WP_012341586.1 ribosome-associated translation inhibitor RaiA -
  BTV20_RS07745 (BTV20_07730) - 1682712..1684088 (-) 1377 WP_075294054.1 alanine/glycine:cation symporter family protein -
  BTV20_RS07750 (BTV20_07735) yacG 1684493..1684687 (-) 195 WP_075294055.1 DNA gyrase inhibitor YacG -
  BTV20_RS07755 (BTV20_07740) coaE 1684684..1685331 (-) 648 WP_075294056.1 dephospho-CoA kinase -
  BTV20_RS07760 (BTV20_07745) pilD 1685351..1686058 (-) 708 WP_075294057.1 prepilin peptidase Machinery gene
  BTV20_RS07765 (BTV20_07750) pilC 1686055..1687275 (-) 1221 WP_012341581.1 type II secretion system F family protein Machinery gene
  BTV20_RS07785 (BTV20_07770) gltX 1687970..1689412 (+) 1443 WP_075294058.1 glutamate--tRNA ligase -
  BTV20_RS07795 (BTV20_07780) - 1689751..1690485 (-) 735 WP_075294059.1 4'-phosphopantetheinyl transferase family protein -
  BTV20_RS07800 (BTV20_07785) - 1690524..1690766 (-) 243 WP_011608610.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27023.51 Da        Isoelectric Point: 8.1958

>NTDB_id=175965 BTV20_RS07760 WP_075294057.1 1685351..1686058(-) (pilD) [Histophilus somni strain USDA-ARS-USMARC-63369]
MIYLAYMLFGGLCGLWVYLYVRQFSAQINKQVYSTFCEIFPENAPHLMPMSILRRKKCGHFSMYFLCGGLWCNICLNFPQ
NIYVGLWLACCSYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLVGSLSGFSVFYLIYIVAKLFYRY
EALGRGDYWLMLGLGSFISWTKLPLLIFLACLTGLIYVVFNARDKKTIFIPFAPFLCLSTIIVYLLNFLREDILP

Nucleotide


Download         Length: 708 bp        

>NTDB_id=175965 BTV20_RS07760 WP_075294057.1 1685351..1686058(-) (pilD) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGATTTATCTAGCTTATATGTTGTTTGGTGGGCTTTGTGGCTTATGGGTTTACCTTTATGTCAGGCAATTTTCTGCTCA
GATTAATAAACAAGTTTACTCGACTTTTTGCGAAATTTTCCCCGAAAATGCACCGCACTTGATGCCTATGTCTATCTTAC
GACGGAAAAAGTGCGGTCATTTTTCTATGTATTTTTTGTGTGGTGGCCTTTGGTGTAATATATGTTTAAATTTCCCACAA
AATATTTATGTTGGTTTATGGTTAGCATGTTGCAGTTATTTAATTTTTTGCCTTGTTTTAGTGGATTGGCTATACCAACT
CGTTTCACAAACCTTATGCCAAGCCCTATTTATTTTAGGGTTATTGGGTGCTTATCAAGGTATTAGCCCATTGACTTTGG
AGCAGTCTTTAGTTGGTAGCTTATCAGGCTTTTCGGTTTTTTATCTTATTTACATTGTTGCAAAATTATTCTATCGTTAT
GAAGCTTTAGGACGTGGCGATTATTGGTTAATGTTAGGGTTAGGGAGCTTTATATCTTGGACAAAATTACCGTTGCTCAT
TTTTCTTGCCTGCCTCACAGGATTAATATATGTCGTTTTTAATGCAAGAGACAAAAAAACAATATTTATTCCTTTTGCCC
CGTTCTTATGTCTCTCAACCATTATCGTATACTTGCTTAATTTTCTAAGGGAGGATATTCTTCCTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z032

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.13

97.872

0.383
  pilD Haemophilus influenzae Rd KW20

36.957

97.872

0.362

Multiple sequence alignment