Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BTV20_RS06575 Genome accession   NZ_CP018805
Coordinates   1415424..1416209 (+) Length   261 a.a.
NCBI ID   WP_012340257.1    Uniprot ID   A0A9Q7E7G6
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1410424..1421209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS06565 (BTV20_06550) - 1411854..1412699 (-) 846 WP_075293730.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BTV20_RS06570 (BTV20_06555) - 1412759..1415299 (-) 2541 WP_075293729.1 penicillin-binding protein 1A -
  BTV20_RS06575 (BTV20_06560) comA 1415424..1416209 (+) 786 WP_012340257.1 hypothetical protein Machinery gene
  BTV20_RS06580 (BTV20_06565) - 1416213..1416752 (+) 540 WP_012340256.1 PilN domain-containing protein -
  BTV20_RS06585 (BTV20_06570) - 1416756..1417253 (+) 498 WP_011609266.1 hypothetical protein -
  BTV20_RS06590 (BTV20_06575) comE 1417269..1418402 (+) 1134 WP_012340255.1 type IV pilus secretin PilQ Machinery gene
  BTV20_RS06595 (BTV20_06580) aroK 1418584..1419111 (+) 528 WP_012340254.1 shikimate kinase AroK -
  BTV20_RS06600 (BTV20_06585) aroB 1419131..1420219 (+) 1089 WP_075293728.1 3-dehydroquinate synthase -
  BTV20_RS06605 (BTV20_06590) - 1420226..1421089 (+) 864 WP_075293727.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 31292.78 Da        Isoelectric Point: 7.1316

>NTDB_id=175957 BTV20_RS06575 WP_012340257.1 1415424..1416209(+) (comA) [Histophilus somni strain USDA-ARS-USMARC-63369]
MRPNKKTANILQIGIHRQDEQWQFLWFDEQKQPHFLTKNDNPPLKLSDLTPQFAKNICTWIACLPNQHVWVKTIILTQKL
NEQECQQQCNLIIENELPTDFDDIWYDYQYKELTQGAKLAIYVVRKQTAQNYVHRFFPIKINTLDCLSNSLLRAFHYFHP
QKEKMETLYLYQDRNGCIAIQEIGQQTIVLQKNDKNITALYQEFCQRFNCQPQHVWCYCEKNEQQNITHKWNIINTELPF
IALGNALWGRHELYQITELKE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=175957 BTV20_RS06575 WP_012340257.1 1415424..1416209(+) (comA) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGAGACCTAACAAAAAAACAGCAAATATTTTACAAATTGGTATTCATAGACAAGATGAACAATGGCAATTCCTCTGGTT
TGATGAACAAAAACAACCGCACTTTTTAACTAAAAACGATAATCCCCCTCTTAAACTATCTGATTTGACACCACAATTCG
CAAAGAATATCTGCACATGGATAGCCTGTTTACCCAATCAGCACGTCTGGGTAAAAACAATCATATTGACGCAAAAGTTA
AATGAGCAAGAATGCCAACAACAATGTAACTTAATCATAGAAAATGAATTGCCGACAGATTTCGATGATATTTGGTACGA
CTACCAATATAAAGAATTAACACAAGGTGCAAAACTGGCTATCTACGTTGTTAGAAAACAAACAGCTCAAAATTATGTGC
ATCGTTTTTTCCCTATAAAAATTAATACATTAGATTGCTTAAGTAATAGCCTACTACGAGCATTCCATTATTTTCACCCC
CAAAAAGAAAAGATGGAAACATTATATTTATATCAGGATCGTAACGGCTGTATAGCAATACAAGAAATCGGACAACAAAC
CATCGTTCTACAAAAAAATGACAAAAATATTACCGCACTTTATCAAGAATTCTGCCAACGTTTTAACTGCCAACCTCAAC
ACGTTTGGTGCTATTGTGAAAAAAATGAACAACAAAATATCACTCATAAATGGAACATCATTAATACCGAATTGCCTTTT
ATTGCTTTAGGAAATGCTCTTTGGGGAAGACATGAACTCTATCAAATAACGGAATTAAAGGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E7G6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.467

98.467

0.398
  comA Haemophilus influenzae Rd KW20

39.3

98.467

0.387