Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   BTV20_RS04040 Genome accession   NZ_CP018805
Coordinates   799807..801813 (+) Length   668 a.a.
NCBI ID   WP_075294487.1    Uniprot ID   A0A9Q6Z233
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 794807..806813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS04010 (BTV20_04000) tatA 795140..795361 (+) 222 WP_075294484.1 Sec-independent protein translocase subunit TatA -
  BTV20_RS04015 (BTV20_04005) tatB 795365..795919 (+) 555 WP_075294485.1 Sec-independent protein translocase protein TatB -
  BTV20_RS04020 (BTV20_04010) tatC 795916..796653 (+) 738 WP_011608704.1 twin-arginine translocase subunit TatC -
  BTV20_RS04025 (BTV20_04015) hemB 796719..797741 (+) 1023 WP_075294486.1 porphobilinogen synthase -
  BTV20_RS04030 (BTV20_04020) purT 797798..798979 (-) 1182 WP_075294519.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BTV20_RS04035 (BTV20_04025) luxS 799020..799526 (-) 507 WP_012340791.1 S-ribosylhomocysteine lyase Regulator
  BTV20_RS04040 (BTV20_04030) recP/tkt 799807..801813 (+) 2007 WP_075294487.1 transketolase Machinery gene
  BTV20_RS04045 (BTV20_04035) pyrG 802040..803668 (+) 1629 WP_075294488.1 glutamine hydrolyzing CTP synthase -
  BTV20_RS04050 (BTV20_04040) - 803716..805551 (-) 1836 WP_075321890.1 acyltransferase family protein -
  BTV20_RS10135 pyrG 805592..805763 (+) 172 Protein_791 CTP synthetase -
  BTV20_RS04055 (BTV20_04045) - 805890..806396 (+) 507 WP_075294489.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73412.18 Da        Isoelectric Point: 5.9961

>NTDB_id=175947 BTV20_RS04040 WP_075294487.1 799807..801813(+) (recP/tkt) [Histophilus somni strain USDA-ARS-USMARC-63369]
MVTRRELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMAIAEKTLAAQFNRAGHDIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWHVIPAVDGHNAEQIIEAIKQAQAEKNKPTL
IMCKTIIGYGSPNKQNTHDSHGAPLGDEEIALTRQALNWNYAPFEIPADIYAKWNAHEKGQVAENAWNEKFAAYEKAYPE
LAVEFKRRLNGELPANWATESQAFIEKLQANPANIASRKASQNAIEAYAKLLPEFLGGSADLAGSNLTLWSGSKPIRATE
NIDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TTALRLIPNLETWRPCDQVESAIAWKAAVERQDGPSALIFTRQNLAQMNRTSEQLENVKRGGYILRACCEKGDCPDLILI
ATGSEVELAMKAAEALDAEGVKVRVVSMPSTNVFDKQDVAYREAVLPSAVTKRVAIEAGISDFWYKYVGTNGRIVGMNSF
GESAPAAQLFKLFGFTVENIVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=175947 BTV20_RS04040 WP_075294487.1 799807..801813(+) (recP/tkt) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGGTAACTCGTAGGGAATTGGCAAATGCAATCCGTTTTTTAAGTATGGATGCGGTACAAAAAGCAAAATCTGGGCATCC
GGGAGCTCCGATGGGAATGGCGGATATTGCGGAAGTATTATGGCGTGATTTTTTAAATCATAATCCGACTAATCCTCAAT
GGGCAAATCGTGATCGTTTTGTGTTATCTAACGGTCATGGCTCAATGTTAATTTATAGTTTACTGCATCTCACCGGTTAC
GATCTTTCTATCGAAGATTTAAAACAATTTCGTCAATTACATTCCAAGACTCCGGGGCACCCTGAATACGGTTATGCTCC
GGGTATTGAAACCACAACGGGTCCATTAGGTCAAGGCATTACTAACGCTGTAGGCATGGCGATTGCAGAAAAAACGTTAG
CTGCACAATTTAATCGAGCAGGTCATGACATTGTTGATCATCATACTTACGTTTTTCTAGGGGATGGTTGCTTAATGGAG
GGTATTTCTCATGAGGCTTGTTCATTAGCCGGCACGTTAGGTCTAGGTAAATTGATTGCTTTTTATGATGATAATAATAT
TTCCATTGACGGTCATGTAGATGGTTGGTTCACTGATGATACACAAAAACGCTTTGAGGCTTACGGCTGGCATGTTATTC
CTGCTGTTGATGGACATAATGCAGAACAAATTATTGAAGCAATAAAACAAGCTCAGGCTGAGAAAAATAAACCAACTTTA
ATTATGTGTAAGACGATTATTGGCTATGGTTCTCCAAATAAGCAAAATACTCATGATAGCCATGGGGCACCATTAGGTGA
TGAAGAAATCGCTTTAACTCGTCAAGCATTAAATTGGAATTACGCACCTTTTGAAATTCCTGCTGATATTTATGCAAAAT
GGAATGCTCACGAAAAAGGACAAGTGGCGGAAAACGCATGGAATGAAAAATTTGCCGCTTATGAGAAAGCTTATCCTGAA
TTAGCGGTTGAATTTAAACGCCGTTTAAATGGGGAATTACCGGCAAACTGGGCAACAGAAAGCCAAGCCTTTATTGAAAA
ATTACAAGCAAATCCAGCCAATATTGCAAGTCGCAAAGCGTCACAAAATGCGATTGAAGCGTATGCAAAATTATTACCGG
AATTTTTAGGCGGGTCAGCTGATTTAGCGGGGTCAAACTTAACGTTATGGTCTGGTTCAAAACCCATTCGTGCGACAGAA
AATATAGATGGTAACTATATTAATTATGGCGTGCGTGAATTCGGAATGTCTGCCATTATGAACGGTATTGCATTACACGG
CGGATTTATTCCTTACGGTGCAACGTTCTTAATGTTTATGGAATATGCACATAATGCAGTGCGTATGGCAGCCTTGATGA
AACAACGTTCATTATTTGTTTATACACATGACTCTATCGGTTTAGGAGAAGACGGTCCGACGCATCAACCAGTTGAGCAA
ACAACCGCACTTCGCTTAATTCCAAATTTAGAAACATGGCGACCTTGCGACCAAGTGGAATCTGCAATCGCATGGAAAGC
GGCGGTTGAACGTCAAGACGGTCCAAGTGCATTAATTTTCACTCGACAAAATCTTGCTCAAATGAACCGCACTTCTGAGC
AATTGGAAAACGTGAAACGTGGCGGTTATATCTTGCGTGCATGCTGTGAAAAAGGTGATTGCCCGGATTTAATCTTGATC
GCCACAGGTTCTGAAGTGGAATTAGCGATGAAAGCAGCGGAAGCGTTAGATGCGGAAGGCGTGAAAGTCCGTGTGGTATC
AATGCCGAGTACGAATGTATTTGATAAACAAGATGTTGCGTACCGTGAGGCAGTATTACCAAGTGCGGTGACTAAACGTG
TTGCAATTGAAGCGGGTATTTCAGATTTCTGGTACAAATATGTTGGTACTAACGGACGTATCGTTGGTATGAATAGCTTC
GGTGAATCAGCACCGGCAGCTCAACTGTTTAAACTCTTTGGCTTCACTGTTGAAAATATTGTGGCAAAGGCAAAAGAGAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(355-526)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z233

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.193

99.401

0.479