Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BTV20_RS04035 Genome accession   NZ_CP018805
Coordinates   799020..799526 (-) Length   168 a.a.
NCBI ID   WP_012340791.1    Uniprot ID   B0UVD9
Organism   Histophilus somni strain USDA-ARS-USMARC-63369     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 794020..804526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV20_RS04010 (BTV20_04000) tatA 795140..795361 (+) 222 WP_075294484.1 Sec-independent protein translocase subunit TatA -
  BTV20_RS04015 (BTV20_04005) tatB 795365..795919 (+) 555 WP_075294485.1 Sec-independent protein translocase protein TatB -
  BTV20_RS04020 (BTV20_04010) tatC 795916..796653 (+) 738 WP_011608704.1 twin-arginine translocase subunit TatC -
  BTV20_RS04025 (BTV20_04015) hemB 796719..797741 (+) 1023 WP_075294486.1 porphobilinogen synthase -
  BTV20_RS04030 (BTV20_04020) purT 797798..798979 (-) 1182 WP_075294519.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  BTV20_RS04035 (BTV20_04025) luxS 799020..799526 (-) 507 WP_012340791.1 S-ribosylhomocysteine lyase Regulator
  BTV20_RS04040 (BTV20_04030) recP/tkt 799807..801813 (+) 2007 WP_075294487.1 transketolase Machinery gene
  BTV20_RS04045 (BTV20_04035) pyrG 802040..803668 (+) 1629 WP_075294488.1 glutamine hydrolyzing CTP synthase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18981.63 Da        Isoelectric Point: 5.2186

>NTDB_id=175946 BTV20_RS04035 WP_012340791.1 799020..799526(-) (luxS) [Histophilus somni strain USDA-ARS-USMARC-63369]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNSEQIEIIDISP
MGCRTGFYMSLIGMPNEQQVANAWSASMQDILNVKNQAEIPELNEYQCGTYTEHSLEDAHNIARNILNRGVGINKNEDLL
LDDNLLNS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=175946 BTV20_RS04035 WP_012340791.1 799020..799526(-) (luxS) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGCCACTACTTGACAGTTTTAAAGTTGATCATACGAGAATGAATGCCCCTGCTGTGCGTGTTGCAAAAACAATGCGAAC
ACCAAAAGGCGACAATATCACTGTTTTTGATCTTCGTTTTTGTATTCCTAATAAAGAAATCCTCTCTCCTAAAGGCATTC
ACACTTTAGAACACTTATTCGCAGGATTTATGCGTGATCATTTAAATAGTGAACAAATTGAAATTATTGATATTTCGCCC
ATGGGCTGTCGAACCGGATTTTATATGTCATTAATTGGCATGCCGAATGAACAACAAGTTGCAAACGCTTGGTCAGCTTC
AATGCAAGATATTTTAAACGTCAAAAATCAAGCCGAAATTCCTGAACTAAACGAATATCAATGTGGAACCTATACTGAAC
ATTCATTGGAAGATGCACATAATATTGCACGGAATATTCTTAATCGAGGCGTAGGTATTAATAAAAATGAAGATCTACTT
TTAGATGATAATTTACTCAATTCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UVD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.455

99.405

0.72