Detailed information NTG0175935

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: BTV20_RS01835
• Genome accession: NZ_CP018805
• Coordinates: 365163..366407 (-)
• Length: 414 a.a.
• NCBI ID: WP_075293630.1
• Uniprot ID: A0A9Q7E5Q0
• Organism: Histophilus somni strain USDA-ARS-USMARC-63369
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 360163..371407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTV20_RS01825 (BTV20_01815)	-	361207..362757 (+)	1551	WP_075293631.1	exopolyphosphatase	-
BTV20_RS01830 (BTV20_01820)	ilvD	362930..364765 (+)	1836	WP_012341084.1	dihydroxy-acid dehydratase	-
BTV20_RS01835 (BTV20_01825)	clpX	365163..366407 (-)	1245	WP_075293630.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
BTV20_RS01840 (BTV20_01830)	clpP	366423..367004 (-)	582	WP_075293629.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
BTV20_RS01845 (BTV20_01835)	tig	367090..368388 (-)	1299	WP_075293628.1	trigger factor	-
BTV20_RS01850 (BTV20_01840)	pilB	368747..370162 (+)	1416	WP_232451458.1	GspE/PulE family protein	Machinery gene

Sequence

Protein

• Length: 414 a.a.
• Molecular weight: 46039.80 Da
• Isoelectric Point: 4.5662

>NTDB_id=175935 BTV20_RS01835 WP_075293630.1 365163..366407(-) (clpX) [Histophilus somni strain USDA-ARS-USMARC-63369]
MTKEKELHCSFCGKEQKEVDKLIAGTSGYICNECIELCHDMLANADDIEEIDEEFQEEEPKLPTPHEIRAHLDDYVIGQD
YAKKVLAVAVYNHYKRLRSEKNTSEVELGKSNILLIGPTGSGKTLLAQTLARMLNVPFAMADATTLTEAGYVGEDVENVL
QKLLQNCDYDIEKAQQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTVASIPPQGGRKHPQQEMLRVDTSK
ILFICGGAFAGLDKIIEKRTNTGGKGIGFGADVRIDEEKVSLTELFKQVEPDDLMKFGLIPEFIGRLPVIAPLSELDEEA
LVKILTEPKNALTKQYQVLFSLENIELEFTQEALIAMAKKALARKTGARGLRSIVETLLLDTMYDLPSIENLQKVIVEEE
TVTENKVPVLKFNS

Nucleotide

• Length: 1245 bp

>NTDB_id=175935 BTV20_RS01835 WP_075293630.1 365163..366407(-) (clpX) [Histophilus somni strain USDA-ARS-USMARC-63369]
ATGACAAAAGAAAAAGAATTACATTGCTCTTTTTGTGGTAAGGAACAAAAAGAAGTAGATAAATTAATTGCAGGCACATC
CGGTTATATTTGTAATGAGTGTATTGAATTATGTCATGACATGTTAGCTAATGCGGATGACATCGAAGAAATTGATGAAG
AATTTCAAGAGGAAGAGCCTAAATTACCGACACCACATGAAATTCGTGCACATTTAGATGATTATGTCATAGGCCAAGAT
TATGCTAAAAAAGTATTAGCTGTGGCGGTGTATAATCATTATAAACGTTTACGTAGCGAAAAAAATACTTCTGAGGTTGA
ATTGGGCAAAAGTAATATTTTGCTTATCGGCCCGACAGGCAGTGGCAAGACTTTATTGGCACAAACGTTAGCTCGTATGC
TCAATGTTCCCTTTGCAATGGCAGATGCAACAACTTTAACTGAAGCGGGATATGTTGGTGAAGATGTTGAAAATGTCTTG
CAAAAATTATTACAAAATTGTGATTATGATATAGAGAAAGCTCAACAAGGTATTATCTATATTGATGAAATTGATAAGAT
TACACGTAAGTCTGAAAATCCTTCTATTACTCGTGATGTATCAGGCGAAGGTGTGCAGCAGGCTTTACTAAAATTAGTTG
AAGGAACGGTAGCTTCTATTCCTCCACAAGGCGGACGAAAGCATCCTCAACAAGAAATGTTGCGTGTGGACACCTCTAAG
ATTTTATTTATTTGTGGCGGTGCTTTTGCCGGTTTAGATAAAATTATTGAGAAAAGAACGAATACCGGTGGCAAAGGTAT
TGGTTTTGGTGCTGATGTTCGTATTGATGAAGAGAAAGTCAGTTTAACCGAATTATTTAAGCAAGTTGAACCTGATGATT
TAATGAAATTTGGCTTAATACCGGAGTTTATCGGTCGTTTACCTGTTATCGCACCTTTAAGCGAACTGGATGAGGAGGCT
TTGGTAAAAATTTTAACTGAGCCGAAAAATGCCCTAACTAAGCAATATCAAGTTTTATTCAGCTTAGAAAATATTGAATT
AGAATTTACCCAAGAAGCATTGATTGCAATGGCGAAAAAAGCACTAGCTCGTAAAACAGGTGCCAGAGGTTTGCGATCTA
TTGTTGAAACCCTATTGCTTGATACTATGTATGATCTCCCTTCTATTGAAAACTTACAGAAAGTTATAGTGGAAGAAGAA
ACAGTCACCGAAAATAAAGTGCCAGTATTGAAGTTCAATAGTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (316-393)

• ClpX C4-type zinc finger (zf-C4_ClpX) (7-43)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-310)

3D structure

• AlphaFold DB: A0A9Q7E5Q0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.135	100	0.594
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.321	97.826	0.531