Detailed information NTG0175866

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: BTV16_RS00790
• Genome accession: NZ_CP018804
• Coordinates: 144138..144806 (+)
• Length: 222 a.a.
• NCBI ID: WP_011608296.1
• Uniprot ID: B0UUW7
• Organism: Histophilus somni strain USDA-ARS-USMARC-63368
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 139138..149806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTV16_RS00760 (BTV16_00760)	recF	139579..140655 (+)	1077	WP_075293535.1	DNA replication/repair protein RecF	-
BTV16_RS00765 (BTV16_00765)	crp	140712..141356 (-)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
BTV16_RS00770 (BTV16_00770)	-	141369..141593 (-)	225	WP_012341336.1	YheU family protein	-
BTV16_RS00775 (BTV16_00775)	slmA	141628..142287 (-)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
BTV16_RS00780 (BTV16_00780)	dut	142287..142742 (-)	456	WP_011608294.1	dUTP diphosphatase	-
BTV16_RS00785 (BTV16_00785)	coaBC	142739..143965 (-)	1227	WP_075293534.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BTV16_RS00790 (BTV16_00790)	radC	144138..144806 (+)	669	WP_011608296.1	RadC family protein	Machinery gene
BTV16_RS00795 (BTV16_00795)	rpmB	145027..145263 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
BTV16_RS00800 (BTV16_00800)	rpmG	145275..145445 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
BTV16_RS00805 (BTV16_00805)	mutM	145551..146363 (+)	813	WP_075293533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BTV16_RS00810 (BTV16_00810)	ilvG	146455..148131 (+)	1677	WP_012340456.1	acetolactate synthase 2 catalytic subunit	-
BTV16_RS00815 (BTV16_00815)	ilvM	148135..148353 (+)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
BTV16_RS00820 (BTV16_00820)	-	148419..149081 (+)	663	WP_075293532.1	MOSC domain-containing protein	-
BTV16_RS00825 (BTV16_00825)	-	149198..149701 (+)	504	WP_011608302.1	chorismate--pyruvate lyase family protein	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25553.76 Da
• Isoelectric Point: 7.3730

>NTDB_id=175866 BTV16_RS00790 WP_011608296.1 144138..144806(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63368]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

• Length: 669 bp

>NTDB_id=175866 BTV16_RS00790 WP_011608296.1 144138..144806(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63368]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT
TCGTATGTATTTACAGACTGAATTAGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (101-220)

• UPF0758 N-terminal (UPF0758_N) (8-75)

3D structure

• AlphaFold DB: B0UUW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631