Detailed information NTG0175753

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: BTV18_RS00790
• Genome accession: NZ_CP018802
• Coordinates: 144469..145137 (+)
• Length: 222 a.a.
• NCBI ID: WP_011608296.1
• Uniprot ID: B0UUW7
• Organism: Histophilus somni strain USDA-ARS-USMARC-63250
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 139469..150137

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BTV18_RS00760 (BTV18_00760)	recF	139910..140986 (+)	1077	WP_075293535.1	DNA replication/repair protein RecF	-
BTV18_RS00765 (BTV18_00765)	crp	141043..141687 (-)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
BTV18_RS00770 (BTV18_00770)	-	141700..141924 (-)	225	WP_012341336.1	YheU family protein	-
BTV18_RS00775 (BTV18_00775)	slmA	141959..142618 (-)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
BTV18_RS00780 (BTV18_00780)	dut	142618..143073 (-)	456	WP_011608294.1	dUTP diphosphatase	-
BTV18_RS00785 (BTV18_00785)	coaBC	143070..144296 (-)	1227	WP_075293534.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
BTV18_RS00790 (BTV18_00790)	radC	144469..145137 (+)	669	WP_011608296.1	RadC family protein	Machinery gene
BTV18_RS00795 (BTV18_00795)	rpmB	145358..145594 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
BTV18_RS00800 (BTV18_00800)	rpmG	145606..145776 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
BTV18_RS00805 (BTV18_00805)	mutM	145882..146694 (+)	813	WP_075293533.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
BTV18_RS00810 (BTV18_00810)	ilvG	146786..148462 (+)	1677	WP_012340456.1	acetolactate synthase 2 catalytic subunit	-
BTV18_RS00815 (BTV18_00815)	ilvM	148466..148684 (+)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
BTV18_RS00820 (BTV18_00820)	-	148750..149412 (+)	663	WP_075293532.1	MOSC domain-containing protein	-
BTV18_RS00825 (BTV18_00825)	-	149529..150032 (+)	504	WP_011608302.1	chorismate--pyruvate lyase family protein	-

Sequence

Protein

• Length: 222 a.a.
• Molecular weight: 25553.76 Da
• Isoelectric Point: 7.3730

>NTDB_id=175753 BTV18_RS00790 WP_011608296.1 144469..145137(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63250]
MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL
QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL
FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

• Length: 669 bp

>NTDB_id=175753 BTV18_RS00790 WP_011608296.1 144469..145137(+) (radC) [Histophilus somni strain USDA-ARS-USMARC-63250]
ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT
ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT
CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA
CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT
TCGTATGTATTTACAGACTGAATTAGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT
TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA
TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT
GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT
TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (101-220)

• UPF0758 N-terminal (UPF0758_N) (8-75)

3D structure

• AlphaFold DB: B0UUW7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631