Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AYO71_RS26100 Genome accession   NZ_CP014947
Coordinates   5808826..5810415 (+) Length   529 a.a.
NCBI ID   WP_041477807.1    Uniprot ID   -
Organism   Pseudomonas koreensis strain D26     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5803826..5815415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYO71_RS26080 (AYO71_26080) pgeF 5805626..5806348 (-) 723 WP_041477810.1 peptidoglycan editing factor PgeF -
  AYO71_RS26085 (AYO71_26085) rluD 5806345..5807307 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AYO71_RS26090 (AYO71_26090) - 5807459..5808475 (+) 1017 WP_041477809.1 outer membrane protein assembly factor BamD -
  AYO71_RS26095 (AYO71_26095) - 5808603..5808836 (+) 234 WP_041477808.1 PP0621 family protein -
  AYO71_RS26100 (AYO71_26100) pilS 5808826..5810415 (+) 1590 WP_041477807.1 sensor histidine kinase Regulator
  AYO71_RS26105 (AYO71_26105) pilR 5810412..5811758 (+) 1347 WP_041477806.1 sigma-54-dependent transcriptional regulator Regulator
  AYO71_RS26110 (AYO71_26110) thiO 5811851..5812951 (-) 1101 WP_041477805.1 glycine oxidase ThiO -
  AYO71_RS26115 (AYO71_26115) - 5813009..5813410 (-) 402 WP_041477804.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58644.32 Da        Isoelectric Point: 6.8213

>NTDB_id=175303 AYO71_RS26100 WP_041477807.1 5808826..5810415(+) (pilS) [Pseudomonas koreensis strain D26]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQNLLGHSQLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=175303 AYO71_RS26100 WP_041477807.1 5808826..5810415(+) (pilS) [Pseudomonas koreensis strain D26]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTTAGTTTTCTGCTGGGTCTGAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCACTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGTTGAATGCGTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTACTCGACG
AACAACGCCGAGTGCAACTGGCCAATCACAGTGCGCAGAATTTGCTCGGCCATAGCCAACTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCGCTGGTCGAGCGCCTGCAATTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCGCTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGATTTCGTCGGCGAAACCCGCGAGCAGGCCAACGAACGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGAAGTATGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACGAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597

Multiple sequence alignment