Detailed information NTG0175304

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AYO71_RS26105
• Genome accession: NZ_CP014947
• Coordinates: 5810412..5811758 (+)
• Length: 448 a.a.
• NCBI ID: WP_041477806.1
• Uniprot ID: -
• Organism: Pseudomonas koreensis strain D26
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5805412..5816758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYO71_RS26080 (AYO71_26080)	pgeF	5805626..5806348 (-)	723	WP_041477810.1	peptidoglycan editing factor PgeF	-
AYO71_RS26085 (AYO71_26085)	rluD	5806345..5807307 (-)	963	WP_016773140.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AYO71_RS26090 (AYO71_26090)	-	5807459..5808475 (+)	1017	WP_041477809.1	outer membrane protein assembly factor BamD	-
AYO71_RS26095 (AYO71_26095)	-	5808603..5808836 (+)	234	WP_041477808.1	PP0621 family protein	-
AYO71_RS26100 (AYO71_26100)	pilS	5808826..5810415 (+)	1590	WP_041477807.1	sensor histidine kinase	Regulator
AYO71_RS26105 (AYO71_26105)	pilR	5810412..5811758 (+)	1347	WP_041477806.1	sigma-54-dependent transcriptional regulator	Regulator
AYO71_RS26110 (AYO71_26110)	thiO	5811851..5812951 (-)	1101	WP_041477805.1	glycine oxidase ThiO	-
AYO71_RS26115 (AYO71_26115)	-	5813009..5813410 (-)	402	WP_041477804.1	type IV pilin protein	-
AYO71_RS26120 (AYO71_26120)	-	5813426..5816515 (-)	3090	WP_041477803.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50122.33 Da
• Isoelectric Point: 6.3600

>NTDB_id=175304 AYO71_RS26105 WP_041477806.1 5810412..5811758(+) (pilR) [Pseudomonas koreensis strain D26]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSVETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLTLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCSADGATADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=175304 AYO71_RS26105 WP_041477806.1 5810412..5811758(+) (pilR) [Pseudomonas koreensis strain D26]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCATTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACGGCGTACGGCAGCGTGGAAACGGCTATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTTGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGTCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAGGACAAACCGGGGCTTTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATCTGACACTGTCGATGCAAGTGAAGCTGCTGCGAGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTACTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCTCGGCGGACGGGGCGACGGCTGATCTGACGCAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAACGCAAACTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.878	98.884	0.77
pilR	Acinetobacter baumannii strain A118	49.02	100	0.502