Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSL41_RS02310 Genome accession   NZ_CP018347
Coordinates   397610..398707 (+) Length   365 a.a.
NCBI ID   WP_000266662.1    Uniprot ID   Q8DMX3
Organism   Streptococcus pneumoniae strain SWU02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 392610..403707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL41_RS02285 pgsA 393131..393676 (-) 546 WP_000712136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BSL41_RS02290 rodZ 393687..394508 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  BSL41_RS02295 yfmH 394550..395833 (-) 1284 WP_000170193.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BSL41_RS02300 yfmF 395830..397080 (-) 1251 WP_046782580.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  BSL41_RS02305 yaaA 397239..397607 (+) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  BSL41_RS02310 recF 397610..398707 (+) 1098 WP_000266662.1 DNA replication/repair protein RecF Machinery gene
  BSL41_RS02315 guaB 398758..400236 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  BSL41_RS02320 trpS 400388..401413 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  BSL41_RS02325 - 401619..403241 (+) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41916.00 Da        Isoelectric Point: 9.0596

>NTDB_id=175098 BSL41_RS02310 WP_000266662.1 397610..398707(+) (recF) [Streptococcus pneumoniae strain SWU02]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=175098 BSL41_RS02310 WP_000266662.1 397610..398707(+) (recF) [Streptococcus pneumoniae strain SWU02]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

100

100

1
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46