Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AYR56_RS01675 Genome accession   NZ_CP014899
Coordinates   364305..364856 (-) Length   183 a.a.
NCBI ID   WP_068225916.1    Uniprot ID   -
Organism   Loigolactobacillus backii strain TMW 1.2002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 359305..369856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR56_RS01655 (AYR56_01660) dnaB 359530..360939 (-) 1410 WP_068225912.1 replicative DNA helicase -
  AYR56_RS01660 (AYR56_01665) rplI 361206..361658 (-) 453 WP_068225913.1 50S ribosomal protein L9 -
  AYR56_RS01665 (AYR56_01670) - 361707..363740 (-) 2034 WP_068225914.1 DHH family phosphoesterase -
  AYR56_RS01670 (AYR56_01675) rpsR 364017..364256 (-) 240 WP_068225915.1 30S ribosomal protein S18 -
  AYR56_RS01675 (AYR56_01680) ssb 364305..364856 (-) 552 WP_068225916.1 single-stranded DNA-binding protein Machinery gene
  AYR56_RS01680 (AYR56_01685) rpsF 364935..365234 (-) 300 WP_068225917.1 30S ribosomal protein S6 -
  AYR56_RS01685 (AYR56_01690) gyrA 365477..367951 (-) 2475 WP_068279473.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19875.40 Da        Isoelectric Point: 4.7501

>NTDB_id=175044 AYR56_RS01675 WP_068225916.1 364305..364856(-) (ssb) [Loigolactobacillus backii strain TMW 1.2002]
MINRVVLVGRLTRDPDLRYTSGGAAVATFTVAVNRQFTNRNGDREADFISCVIWRKAAENFANFTHKGSLVGVDGRIQTR
NYDNAEGQRVYVTEVVVDNFSLLESRSTDERRQQNNANQNPGGYQDKPASNFGGNANNNPAPQSSSSQAPASGSTSNTPN
SNPNDPFANNGDSIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=175044 AYR56_RS01675 WP_068225916.1 364305..364856(-) (ssb) [Loigolactobacillus backii strain TMW 1.2002]
ATGATTAATCGTGTCGTTCTTGTTGGTCGTTTGACCCGGGACCCTGATTTACGTTATACCTCTGGTGGTGCTGCTGTAGC
AACTTTTACTGTCGCCGTTAACCGTCAATTCACTAACCGTAATGGTGATCGTGAAGCTGATTTTATCAGTTGTGTTATTT
GGCGAAAGGCCGCAGAAAATTTTGCTAACTTTACCCATAAAGGATCATTAGTTGGTGTTGATGGCCGAATTCAAACGCGT
AATTACGATAATGCAGAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGTCGATAATTTCTCATTGTTAGAATCACGGTC
TACTGACGAACGTCGTCAGCAAAATAATGCTAACCAAAACCCTGGTGGTTATCAAGATAAGCCAGCCAGTAACTTTGGTG
GTAACGCTAATAATAATCCAGCTCCTCAGTCATCAAGTAGTCAAGCACCTGCGAGTGGTTCAACCAGCAATACACCTAAT
AGCAATCCTAATGATCCGTTTGCAAATAACGGTGATTCGATTGATATTTCCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.213

100

0.672
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.476

100

0.546

Multiple sequence alignment