Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AYR60_RS05475 Genome accession   NZ_CP014872
Coordinates   1113905..1115608 (-) Length   567 a.a.
NCBI ID   WP_056997625.1    Uniprot ID   A0A0R2JVJ6
Organism   Fructilactobacillus lindneri strain TMW 1.1993     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1108905..1120608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR60_RS05455 (AYR60_05455) priA 1109281..1111686 (-) 2406 WP_065866223.1 primosomal protein N' -
  AYR60_RS05460 (AYR60_05460) coaBC 1111703..1112902 (-) 1200 WP_056997623.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AYR60_RS05465 (AYR60_05465) rpoZ 1113008..1113208 (-) 201 WP_054646215.1 DNA-directed RNA polymerase subunit omega -
  AYR60_RS05470 (AYR60_05470) gmk 1113205..1113822 (-) 618 WP_056997624.1 guanylate kinase -
  AYR60_RS05475 (AYR60_05475) recN 1113905..1115608 (-) 1704 WP_056997625.1 DNA repair protein RecN Machinery gene
  AYR60_RS05480 (AYR60_05480) - 1115627..1116445 (-) 819 WP_054646216.1 TlyA family RNA methyltransferase -
  AYR60_RS05485 (AYR60_05485) - 1116458..1117324 (-) 867 WP_065866224.1 polyprenyl synthetase family protein -
  AYR60_RS05490 (AYR60_05490) - 1117325..1117609 (-) 285 WP_054646218.1 exodeoxyribonuclease VII small subunit -
  AYR60_RS05495 (AYR60_05495) xseA 1117611..1118957 (-) 1347 WP_054646219.1 exodeoxyribonuclease VII large subunit -
  AYR60_RS05500 (AYR60_05500) - 1118954..1119811 (-) 858 WP_054646220.1 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase -
  AYR60_RS05505 (AYR60_05505) nusB 1119909..1120253 (-) 345 WP_263850436.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64254.83 Da        Isoelectric Point: 5.0719

>NTDB_id=174946 AYR60_RS05475 WP_056997625.1 1113905..1115608(-) (recN) [Fructilactobacillus lindneri strain TMW 1.1993]
MLKEISIKNFAIIERLSVNFETGMTVLTGETGAGKSIIIDAVGLLAGGRGSQHFIRTGANKSVLQGLFQVPKGGLTEQKL
DEYGIDHSDDNVILQRELYRNGRNICRINGMLVNTNTLKQVGETLVDIYGQNEHQLLMQSDQHLHLLDEFVGNQIKPVLQ
KYQSKYTEYLKLKKQLENKNQNEKEWAQRLDMLKYQVDEIEKAELTNGEEEELISEKDRLNNFQTINESLSNGLNNIEGN
ETVSPLDMIGEAMSSIEDIERLDDDFKKISENIKGAYYMLQDATGEISNQLDSLEFDENRLNEVQSRLNTIFELKHKYGD
SIGQILQYFEKISRELHEMEIEENTGNDLEKNLADCVLQLNKLGKKLKSIRHDGAQKLKAEIHQQLADLYMDKTEFEVRF
SSLSKDTFNRFGIENVEFYIRTNPGESMQPLSKIASGGELSRIMLALKTIFSKLQGITSIIFDEVDTGVSGRVAQAIADK
IHGISIQSQALCITHLPQVAAMADHQYYISKHIDKEHRTETTIKLIKGEARVNELARMLAGTTVTKLTLEHAQELLKLAD
KEKETNV

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=174946 AYR60_RS05475 WP_056997625.1 1113905..1115608(-) (recN) [Fructilactobacillus lindneri strain TMW 1.1993]
TTGTTAAAAGAAATATCAATCAAAAATTTTGCAATTATTGAACGTTTATCAGTTAATTTTGAAACTGGAATGACAGTTTT
AACTGGAGAAACAGGTGCAGGGAAATCAATTATTATTGATGCAGTTGGGTTGTTAGCTGGTGGGCGTGGTTCCCAACATT
TTATTCGTACTGGAGCAAATAAATCAGTGTTACAGGGCTTGTTTCAAGTTCCTAAAGGTGGATTAACCGAACAGAAACTT
GATGAGTATGGAATTGACCATAGTGATGATAATGTAATTTTACAACGTGAATTATATCGAAACGGTCGTAATATTTGTCG
GATTAATGGCATGTTAGTAAATACAAATACTTTAAAACAAGTTGGAGAGACTTTAGTTGATATTTATGGACAAAACGAAC
ACCAACTTTTGATGCAAAGTGATCAACATTTGCATTTGTTAGATGAATTTGTTGGTAATCAAATTAAGCCTGTTTTACAA
AAATACCAGTCTAAATATACAGAATATTTAAAACTAAAAAAACAATTGGAAAATAAGAATCAAAATGAAAAAGAATGGGC
TCAAAGATTAGATATGCTTAAATATCAAGTTGATGAAATTGAAAAAGCAGAGCTGACAAATGGCGAAGAAGAAGAATTGA
TTTCAGAAAAAGATCGACTTAATAACTTTCAAACTATTAACGAAAGCCTTAGTAATGGTTTAAATAACATTGAAGGTAAT
GAAACAGTTAGCCCTCTTGATATGATTGGTGAAGCAATGAGTTCTATCGAAGACATTGAACGTCTTGATGATGATTTCAA
AAAAATTTCTGAGAATATTAAAGGTGCATACTATATGCTTCAAGATGCCACTGGTGAAATATCAAATCAGTTAGATTCTT
TAGAATTTGATGAGAATCGATTAAATGAAGTTCAATCACGTTTAAATACTATTTTCGAATTAAAACATAAATATGGGGAT
TCAATCGGTCAAATTTTACAATATTTTGAAAAAATTTCTCGTGAATTACATGAAATGGAAATTGAAGAAAATACTGGAAA
TGATTTAGAAAAAAATTTAGCTGATTGTGTTCTTCAATTAAATAAATTGGGTAAAAAATTAAAAAGTATTCGTCATGATG
GGGCACAAAAATTAAAAGCAGAAATTCACCAGCAGCTGGCTGATTTATATATGGATAAAACAGAATTTGAAGTTCGTTTT
AGTAGTTTGTCTAAAGATACATTTAATCGGTTTGGAATTGAAAATGTGGAGTTTTATATTCGTACTAATCCTGGAGAATC
AATGCAGCCGCTTTCAAAAATAGCATCTGGAGGAGAACTGTCTCGAATTATGTTAGCGCTGAAAACTATTTTTTCCAAAC
TCCAAGGAATAACTTCAATTATTTTTGATGAAGTTGATACTGGGGTTTCTGGTCGAGTAGCACAAGCTATCGCTGATAAA
ATTCATGGAATAAGCATTCAATCTCAGGCTTTATGTATTACACACTTACCTCAAGTTGCAGCTATGGCAGACCATCAGTA
TTATATTTCTAAACACATCGATAAAGAACATCGAACAGAAACTACCATCAAATTAATTAAAGGCGAAGCTCGTGTAAATG
AACTTGCTAGAATGCTAGCTGGTACCACGGTTACAAAATTAACTTTGGAACACGCTCAAGAATTATTAAAGTTGGCTGAT
AAAGAAAAAGAAACAAATGTATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2JVJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.097

100

0.49

Multiple sequence alignment