Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PMA3_RS06155 Genome accession   NZ_CP014870
Coordinates   1365974..1366612 (+) Length   212 a.a.
NCBI ID   WP_064676332.1    Uniprot ID   A0A191YPS0
Organism   Pseudomonas silesiensis strain A3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360974..1371612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMA3_RS06135 (PMA3_06130) - 1361178..1362110 (+) 933 WP_064676328.1 ABC transporter ATP-binding protein -
  PMA3_RS06140 (PMA3_06135) - 1362107..1362886 (+) 780 WP_064676329.1 ABC transporter permease -
  PMA3_RS06145 (PMA3_06140) - 1362999..1363517 (-) 519 WP_064676330.1 DUF2062 domain-containing protein -
  PMA3_RS06150 (PMA3_06145) comA 1363654..1365876 (+) 2223 WP_064676331.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PMA3_RS06155 (PMA3_06150) exbB 1365974..1366612 (+) 639 WP_064676332.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PMA3_RS06160 (PMA3_06155) - 1366609..1367040 (+) 432 WP_064676333.1 ExbD/TolR family protein -
  PMA3_RS06165 (PMA3_06160) lpxK 1367040..1368050 (+) 1011 WP_064676334.1 tetraacyldisaccharide 4'-kinase -
  PMA3_RS06170 (PMA3_06165) - 1368076..1368261 (+) 186 WP_007945752.1 Trm112 family protein -
  PMA3_RS06175 (PMA3_06170) kdsB 1368258..1369022 (+) 765 WP_064676335.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PMA3_RS06180 (PMA3_06175) - 1369022..1369486 (+) 465 WP_064676336.1 low molecular weight protein-tyrosine-phosphatase -
  PMA3_RS06185 (PMA3_06180) murB 1369483..1370502 (+) 1020 WP_064676337.1 UDP-N-acetylmuramate dehydrogenase -
  PMA3_RS06190 (PMA3_06185) - 1370752..1371222 (+) 471 WP_064676338.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23027.26 Da        Isoelectric Point: 7.3616

>NTDB_id=174915 PMA3_RS06155 WP_064676332.1 1365974..1366612(+) (exbB) [Pseudomonas silesiensis strain A3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=174915 PMA3_RS06155 WP_064676332.1 1365974..1366612(+) (exbB) [Pseudomonas silesiensis strain A3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCAATCGTTGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAAGACA
AGCAACTCAATAAAGAGAAGCTCAAGGAACTGCGCGCCAACTCGCCGTTGGGTGAAATCCTGGCGGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCACGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGCTTGCTCGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGGGCATGGGCACCAACGCTGCCGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACCACCGCC
GCGGGCCTGATGGTCGGCATTCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTTGTGCAGGGTGATCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191YPS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.057

0.854

Multiple sequence alignment