Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   A3218_RS03790 Genome accession   NZ_CP014867
Coordinates   897448..899679 (-) Length   743 a.a.
NCBI ID   WP_062823191.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain 189 isolate 189     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892448..904679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3218_RS03755 (A3218_03755) murB 892826..893845 (-) 1020 WP_062823187.1 UDP-N-acetylmuramate dehydrogenase -
  A3218_RS03760 (A3218_03760) - 893842..894306 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  A3218_RS03765 (A3218_03765) kdsB 894306..895070 (-) 765 WP_062823188.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A3218_RS03770 (A3218_03770) - 895067..895252 (-) 186 WP_007931663.1 Trm112 family protein -
  A3218_RS03775 (A3218_03775) lpxK 895275..896285 (-) 1011 WP_062823189.1 tetraacyldisaccharide 4'-kinase -
  A3218_RS03780 (A3218_03780) - 896285..896713 (-) 429 WP_062823190.1 biopolymer transporter ExbD -
  A3218_RS03785 (A3218_03785) exbB 896710..897345 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A3218_RS03790 (A3218_03790) comA 897448..899679 (-) 2232 WP_062823191.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A3218_RS03795 (A3218_03795) - 899828..900343 (+) 516 WP_007931653.1 DUF2062 domain-containing protein -
  A3218_RS03800 (A3218_03800) - 900392..901171 (-) 780 WP_007931651.1 ABC transporter permease -
  A3218_RS03805 (A3218_03805) - 901168..902100 (-) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  A3218_RS03810 (A3218_03810) - 902233..902856 (-) 624 WP_062823192.1 glutathione S-transferase -
  A3218_RS03815 (A3218_03815) - 902899..903558 (-) 660 WP_009042834.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81022.00 Da        Isoelectric Point: 9.9596

>NTDB_id=174872 A3218_RS03790 WP_062823191.1 897448..899679(-) (comA) [Pseudomonas chlororaphis strain 189 isolate 189]
MRTGMLAFAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAEPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRRPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWVAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWAGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALQLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=174872 A3218_RS03790 WP_062823191.1 897448..899679(-) (comA) [Pseudomonas chlororaphis strain 189 isolate 189]
ATGCGCACAGGGATGCTGGCGTTTGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGTT
GGCAGTGCTGCCGGTAGTAGCCTTGATGCTGTTGCCGTTTCGCACCTATCCATTGGCGCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGAACCACTCGACGGGCAGACTCGCTGGCTCGAAGGG
CGGGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTACGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCTGCTACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTACTGGGCGACGGCTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCAGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCGTTCGCTTC
GGCCCTGGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCTTGCTGGCATTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGCCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTTGGCGGGCGCCTGGGGGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGTTTGCTCTGGCTGGCCGGTGGCTTGCTGGACCTGCTGTT
TCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCCTGGGTAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTAGTGCTGC
CGTCCTTGCGCAAGCTGGGCGTCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGTGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGGCTGGTGCGCAGAACGGTA
ACCAGAAGTCTTGCGTAATGCAGGTCGAGGCCCAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCCGAG
CGCGCCTTACTGGATACCCCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGTTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCGCCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAATGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGCGCGGAGCAGGGAGCGCTGCAGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.673

96.77

0.626

Multiple sequence alignment