Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A3218_RS03785 Genome accession   NZ_CP014867
Coordinates   896710..897345 (-) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain 189 isolate 189     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 891710..902345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3218_RS03750 (A3218_03750) - 892107..892577 (-) 471 WP_062823186.1 (2Fe-2S)-binding protein -
  A3218_RS03755 (A3218_03755) murB 892826..893845 (-) 1020 WP_062823187.1 UDP-N-acetylmuramate dehydrogenase -
  A3218_RS03760 (A3218_03760) - 893842..894306 (-) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  A3218_RS03765 (A3218_03765) kdsB 894306..895070 (-) 765 WP_062823188.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A3218_RS03770 (A3218_03770) - 895067..895252 (-) 186 WP_007931663.1 Trm112 family protein -
  A3218_RS03775 (A3218_03775) lpxK 895275..896285 (-) 1011 WP_062823189.1 tetraacyldisaccharide 4'-kinase -
  A3218_RS03780 (A3218_03780) - 896285..896713 (-) 429 WP_062823190.1 biopolymer transporter ExbD -
  A3218_RS03785 (A3218_03785) exbB 896710..897345 (-) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A3218_RS03790 (A3218_03790) comA 897448..899679 (-) 2232 WP_062823191.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A3218_RS03795 (A3218_03795) - 899828..900343 (+) 516 WP_007931653.1 DUF2062 domain-containing protein -
  A3218_RS03800 (A3218_03800) - 900392..901171 (-) 780 WP_007931651.1 ABC transporter permease -
  A3218_RS03805 (A3218_03805) - 901168..902100 (-) 933 WP_007931649.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=174871 A3218_RS03785 WP_007931657.1 896710..897345(-) (exbB) [Pseudomonas chlororaphis strain 189 isolate 189]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=174871 A3218_RS03785 WP_007931657.1 896710..897345(-) (exbB) [Pseudomonas chlororaphis strain 189 isolate 189]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATTGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGTACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment