Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A3L20_RS22005 Genome accession   NZ_CP014847
Coordinates   4383389..4385128 (-) Length   579 a.a.
NCBI ID   WP_000947759.1    Uniprot ID   A0A9W7Q8P2
Organism   Bacillus thuringiensis strain HD12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4378389..4390128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L20_RS21975 (A3L20_21975) - 4378649..4378882 (+) 234 WP_001190195.1 DUF2627 domain-containing protein -
  A3L20_RS21980 (A3L20_21980) - 4378932..4379660 (-) 729 WP_000172594.1 glycerophosphodiester phosphodiesterase -
  A3L20_RS21985 (A3L20_21985) - 4379711..4379857 (+) 147 WP_001247671.1 YycC family protein -
  A3L20_RS21990 (A3L20_21990) - 4380071..4380634 (-) 564 WP_000791083.1 PRK06770 family protein -
  A3L20_RS21995 (A3L20_21995) spo0A 4380888..4381682 (-) 795 WP_014894889.1 sporulation transcription factor Spo0A Regulator
  A3L20_RS22000 (A3L20_22000) spoIVB 4381972..4383270 (-) 1299 WP_002000940.1 SpoIVB peptidase -
  A3L20_RS22005 (A3L20_22005) recN 4383389..4385128 (-) 1740 WP_000947759.1 DNA repair protein RecN Machinery gene
  A3L20_RS22010 (A3L20_22010) argR 4385393..4385842 (-) 450 WP_001032580.1 arginine repressor ArgR -
  A3L20_RS22015 (A3L20_22015) - 4385985..4386824 (-) 840 WP_000111874.1 TlyA family RNA methyltransferase -
  A3L20_RS22020 (A3L20_22020) dxs 4386828..4388720 (-) 1893 WP_000366457.1 1-deoxy-D-xylulose-5-phosphate synthase -
  A3L20_RS22025 (A3L20_22025) ispA 4389022..4389912 (-) 891 WP_000150374.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65835.99 Da        Isoelectric Point: 4.8231

>NTDB_id=174726 A3L20_RS22005 WP_000947759.1 4383389..4385128(-) (recN) [Bacillus thuringiensis strain HD12]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDEKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKSLVDIHGQHETQDLMNEERHLFMLDHFDGDRIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEMYQENYDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KRAGNAEEPLVEGAPVRLTVDGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=174726 A3L20_RS22005 WP_000947759.1 4383389..4385128(-) (recN) [Bacillus thuringiensis strain HD12]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAAGCATTAAATATTTCTTTTCAAAAAGGTTTAACGGTTTT
AAGCGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGATCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATTGAAGGGCTATTTTATGTTGAAGATGAGAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGCATGATTATTTTAAAGCGTGATATTGCTGCGAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAGCTTGTTACACTTAGCATATTAAAAGAAATTGGGAAATCACTTGTTGATATTCATGGACAGCACG
AAACGCAAGATTTAATGAATGAAGAACGACATCTGTTTATGCTTGATCACTTTGATGGGGATCGAATCGTTAAACAATTA
GACATATATCAAAATGTATACGCTGACTATGAAAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATTCGCAAGGCAGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCC
GACGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAAAGTATTACACATTTAGATGAAATGTATCAAGA
GAATTATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAGGTTGCCTATCAACTGAGAGAAAAGCTCGATATGATGG
AATATGATCCAAATCGTTTAGATGAAATCGAAACACGTTTGAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCAGATAAAATTGAACAGGAAATTTTTACAATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAGAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAGCTTG
CAGAACATCTTACAAATGCAATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACGAAATTTGAAGTGCGAATTATG
AAGAGAGCAGGAAATGCAGAAGAACCCCTTGTGGAAGGTGCACCGGTAAGACTTACGGTGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACGAACCCAGGAGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGGGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTAAGT
GGCCGAGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCACATTTATTTATTCGAAAACAAGTAGCGAATGATCGGACAATTACATCAGTTACTG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTAGAAATCACAGATTTAACGACAGAGCAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment