Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   B14_RS09115 Genome accession   NZ_CP014842
Coordinates   1766017..1766352 (-) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain SCDB 14     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1761017..1771352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS09070 (B14_01816) comGD 1761300..1761737 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  B14_RS09075 comGE 1761721..1762068 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  B14_RS09080 (B14_01817) comGF 1762094..1762465 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  B14_RS09085 (B14_01818) comGG 1762478..1762843 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  B14_RS09090 (B14_01819) - 1762932..1763114 (+) 183 WP_003183456.1 YqzE family protein -
  B14_RS09095 (B14_01820) - 1763138..1763458 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  B14_RS09100 (B14_01821) tapA 1763735..1764463 (+) 729 WP_080623590.1 amyloid fiber anchoring/assembly protein TapA -
  B14_RS09105 (B14_01822) sipW 1764460..1765044 (+) 585 WP_003183449.1 signal peptidase I SipW -
  B14_RS09110 (B14_01823) tasA 1765118..1765912 (+) 795 WP_003183447.1 biofilm matrix protein TasA -
  B14_RS09115 (B14_01824) sinR 1766017..1766352 (-) 336 WP_025804940.1 transcriptional regulator SinR Regulator
  B14_RS09120 (B14_01825) sinI 1766386..1766562 (-) 177 WP_003183444.1 anti-repressor SinI Regulator
  B14_RS09125 (B14_01826) - 1766753..1767547 (-) 795 WP_003183441.1 YqhG family protein -
  B14_RS09130 (B14_01827) - 1767554..1769233 (-) 1680 WP_003183439.1 DEAD/DEAH box helicase -
  B14_RS09135 (B14_01828) gcvT 1769826..1770920 (+) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=174659 B14_RS09115 WP_025804940.1 1766017..1766352(-) (sinR) [Bacillus licheniformis strain SCDB 14]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=174659 B14_RS09115 WP_025804940.1 1766017..1766352(-) (sinR) [Bacillus licheniformis strain SCDB 14]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment