Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B14_RS03420 Genome accession   NZ_CP014842
Coordinates   703789..704523 (+) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis strain SCDB 14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 698789..709523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS03395 (B14_00679) degS 699087..700244 (+) 1158 WP_003185733.1 sensor histidine kinase Regulator
  B14_RS03400 (B14_00680) degU 700326..701015 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  B14_RS03405 (B14_00681) - 701135..701977 (+) 843 WP_003185726.1 DegV family protein -
  B14_RS03410 (B14_00682) comFA 702099..703493 (+) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  B14_RS03415 (B14_00683) - 703548..703832 (+) 285 WP_003185718.1 late competence development ComFB family protein -
  B14_RS03420 comFC 703789..704523 (+) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  B14_RS03425 (B14_00684) - 704582..705001 (+) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  B14_RS03430 (B14_00685) flgM 705081..705347 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  B14_RS03435 (B14_00686) - 705366..705842 (+) 477 WP_003185711.1 flagellar protein FlgN -
  B14_RS03440 (B14_00687) flgK 705858..707381 (+) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  B14_RS03445 (B14_00688) flgL 707392..708303 (+) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  B14_RS03450 (B14_00689) - 708353..708919 (+) 567 WP_003185702.1 DUF6470 family protein -
  B14_RS03455 (B14_00690) fliW 708941..709372 (+) 432 WP_025807162.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=174638 B14_RS03420 WP_011198352.1 703789..704523(+) (comFC) [Bacillus licheniformis strain SCDB 14]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=174638 B14_RS03420 WP_011198352.1 703789..704523(+) (comFC) [Bacillus licheniformis strain SCDB 14]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment