Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   B14_RS03400 Genome accession   NZ_CP014842
Coordinates   700326..701015 (+) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus licheniformis strain SCDB 14     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 695326..706015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS03375 (B14_00675) - 695501..696565 (+) 1065 WP_003185739.1 glycosyltransferase family 4 protein -
  B14_RS03380 (B14_00676) - 696685..697059 (+) 375 WP_003185738.1 YunG family protein -
  B14_RS03385 (B14_00677) - 697144..698220 (-) 1077 WP_003185737.1 LCP family protein -
  B14_RS03390 (B14_00678) - 698235..698873 (-) 639 WP_003185736.1 YigZ family protein -
  B14_RS03395 (B14_00679) degS 699087..700244 (+) 1158 WP_003185733.1 sensor histidine kinase Regulator
  B14_RS03400 (B14_00680) degU 700326..701015 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  B14_RS03405 (B14_00681) - 701135..701977 (+) 843 WP_003185726.1 DegV family protein -
  B14_RS03410 (B14_00682) comFA 702099..703493 (+) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  B14_RS03415 (B14_00683) - 703548..703832 (+) 285 WP_003185718.1 late competence development ComFB family protein -
  B14_RS03420 comFC 703789..704523 (+) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  B14_RS03425 (B14_00684) - 704582..705001 (+) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  B14_RS03430 (B14_00685) flgM 705081..705347 (+) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  B14_RS03435 (B14_00686) - 705366..705842 (+) 477 WP_003185711.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=174636 B14_RS03400 WP_003185730.1 700326..701015(+) (degU) [Bacillus licheniformis strain SCDB 14]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=174636 B14_RS03400 WP_003185730.1 700326..701015(+) (degU) [Bacillus licheniformis strain SCDB 14]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTTGTTA
TCATGGATATTAATATGCCGAATGTGAACGGAGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCCATCCATGATGACGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGGGGCTATCTGCTGAAAGA
AATGGATGCCGATACGCTGATTGAAGCCGTGAAAGTAGTAGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACACACA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAGCATGAGGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTCACAAGAAGGGAATGCGAGGTACTGCAGATGCTGGCGGATGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTTGTTGTAGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment