Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   A1140_RS07640 Genome accession   NZ_CP014834
Coordinates   1571987..1572703 (+) Length   238 a.a.
NCBI ID   WP_103207458.1    Uniprot ID   A0AAQ0HQG5
Organism   Staphylococcus felis strain BN1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566987..1577703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1140_RS07610 (A1140_07465) - 1568265..1569071 (+) 807 WP_349420737.1 carbon-nitrogen family hydrolase -
  A1140_RS07615 - 1569322..1569435 (-) 114 WP_194295051.1 delta-lysin family phenol-soluble modulin -
  A1140_RS07620 (A1140_07470) - 1569798..1570364 (+) 567 WP_115871109.1 accessory gene regulator AgrB -
  A1140_RS07625 (A1140_07475) agrD 1570367..1570504 (+) 138 WP_115871108.1 cyclic lactone autoinducer peptide AgrD -
  A1140_RS07630 - 1570558..1570695 (+) 138 WP_349420738.1 hypothetical protein -
  A1140_RS07635 (A1140_07480) - 1571259..1571972 (+) 714 Protein_1479 GHKL domain-containing protein -
  A1140_RS07640 (A1140_07485) agrA 1571987..1572703 (+) 717 WP_103207458.1 quorum-sensing response regulator AgrA Regulator
  A1140_RS07645 (A1140_07490) - 1572792..1574276 (-) 1485 WP_349420740.1 sucrose-6-phosphate hydrolase -
  A1140_RS07650 (A1140_07495) - 1574501..1574725 (-) 225 WP_103207455.1 sulfurtransferase TusA family protein -
  A1140_RS07655 (A1140_07500) - 1574742..1575818 (-) 1077 WP_115871105.1 YeeE/YedE family protein -
  A1140_RS07660 (A1140_07505) - 1576484..1577128 (-) 645 WP_115856971.1 redox-sensing transcriptional repressor Rex -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27928.86 Da        Isoelectric Point: 4.8715

>NTDB_id=174445 A1140_RS07640 WP_103207458.1 1571987..1572703(+) (agrA) [Staphylococcus felis strain BN1]
MKILICEDDPKQRERMQQIIENYIMIEEKPMEVEIATNDPYEILEAAKNMSDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAALDFIFKDDPDELQTRIIDCLETALKRLDLLTKDNTIETLELKRGSSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFVRCHNSFVLNRHNISHVDSKERIAYFKNDEYCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=174445 A1140_RS07640 WP_103207458.1 1571987..1572703(+) (agrA) [Staphylococcus felis strain BN1]
ATGAAAATACTGATTTGCGAAGATGATCCAAAACAGCGTGAACGAATGCAACAAATTATTGAGAATTATATTATGATTGA
AGAAAAACCAATGGAAGTTGAAATTGCAACAAATGATCCATATGAGATTTTAGAAGCTGCTAAAAATATGTCAGACATTG
GCTGTTATTTTTTAGATATTCAACTTGAATCTGATATCAATGGTATTAAGTTAGGTAGTGAAATTAGAAAACATGATCCT
GTTGGAAATATTATTTTTGTAACAAGTCACAGTGAGTTAACTTATCTCACATTTGTTTATAAAGTAGCCGCACTTGACTT
TATTTTTAAAGATGATCCTGACGAATTGCAAACGCGTATTATTGATTGTTTAGAAACTGCATTAAAACGTTTAGATTTAT
TAACAAAAGACAATACCATTGAAACATTAGAGCTAAAGCGCGGTAGTAGTTCTGTTTATGTCAATTATGATGAAGTGATG
TTTTTCGAGTCTTCTCCAAAGTCTCACCGTTTAATCGCACATTTGGACAACCGTCAAATTGAATTTTATGGTAATCTCAA
GGAACTTGCACAACTTGATGACCGTTTCGTCCGTTGTCACAATAGTTTTGTTTTAAATCGACATAATATTTCACATGTCG
ACTCTAAAGAACGCATCGCTTATTTTAAAAACGACGAGTATTGTTATGTCTCTGTTCGTAATCTCAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828
  comE/comE1 Streptococcus equinus JB1

35.802

100

0.366

Multiple sequence alignment