Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A1140_RS04075 Genome accession   NZ_CP014834
Coordinates   861046..861912 (+) Length   288 a.a.
NCBI ID   WP_115890392.1    Uniprot ID   -
Organism   Staphylococcus felis strain BN1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 856046..866912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1140_RS04045 (A1140_03970) ylqF 856091..856966 (+) 876 WP_115871438.1 ribosome biogenesis GTPase YlqF -
  A1140_RS04050 (A1140_03975) - 856959..857741 (+) 783 WP_115890394.1 ribonuclease HII -
  A1140_RS04055 (A1140_03980) - 857857..858126 (+) 270 WP_115890393.1 hypothetical protein -
  A1140_RS04060 (A1140_03985) - 858252..858581 (-) 330 WP_103209426.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  A1140_RS04065 (A1140_03990) sucC 858765..859931 (+) 1167 WP_115856006.1 ADP-forming succinate--CoA ligase subunit beta -
  A1140_RS04070 (A1140_03995) sucD 859953..860858 (+) 906 WP_103209423.1 succinate--CoA ligase subunit alpha -
  A1140_RS04075 (A1140_04000) dprA 861046..861912 (+) 867 WP_115890392.1 DNA-processing protein DprA Machinery gene
  A1140_RS04080 (A1140_04005) topA 862017..864086 (+) 2070 WP_115925238.1 type I DNA topoisomerase -
  A1140_RS04085 (A1140_04010) trmFO 864106..865413 (+) 1308 WP_115902573.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A1140_RS04090 (A1140_04015) - 865532..866422 (+) 891 WP_167388996.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32976.14 Da        Isoelectric Point: 9.6243

>NTDB_id=174430 A1140_RS04075 WP_115890392.1 861046..861912(+) (dprA) [Staphylococcus felis strain BN1]
MQKIFLLLLYAGFSTHQIQKIERLMPNMLNPPYAFSKFQKIRSLFNHNPDIQKKFQLLEQLNYDVILDDLRQKNIKVVDM
TSTYYPHLLKEIFDPPYVLFCKGNLQLLNHTNQTLSIVGARMHTAYTTQALEYLFPYFATKKLIIVSGLASGTDALAHQY
AISHHLSTIGVLAFGHDHHYPQNTKHLRKQIEKMSLTVSEYPPHTPPSRYRFPERNRIISGVSKGVFVTEAKEKSGALIT
IDQALEQNRNVYVLPGTMFDTHTKGNLMRAKEGAEIVLGAADILKDYE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=174430 A1140_RS04075 WP_115890392.1 861046..861912(+) (dprA) [Staphylococcus felis strain BN1]
ATGCAAAAAATATTTCTATTATTGCTTTATGCTGGGTTCTCAACACATCAGATACAGAAAATCGAAAGGCTTATGCCAAA
TATGCTTAATCCTCCTTATGCATTTAGCAAATTCCAAAAAATACGCTCTCTTTTTAATCATAATCCAGATATACAGAAAA
AATTTCAACTGTTAGAACAACTAAATTATGATGTCATTCTAGACGACTTACGCCAAAAAAATATTAAAGTAGTTGACATG
ACGAGCACTTATTATCCTCATTTGTTGAAAGAAATATTCGATCCCCCCTATGTTCTTTTTTGTAAAGGAAATCTCCAATT
ATTAAACCATACGAATCAAACGTTGAGTATAGTAGGTGCTCGAATGCACACAGCCTACACAACACAAGCGTTAGAATATC
TATTTCCTTATTTTGCAACAAAAAAATTAATTATAGTGTCTGGTTTGGCCAGTGGAACAGATGCATTAGCCCATCAATAC
GCCATATCACATCATCTATCGACAATTGGTGTTTTAGCGTTTGGACATGACCATCATTACCCACAAAATACGAAACATTT
ACGAAAGCAAATTGAAAAAATGAGTTTAACCGTGAGTGAATATCCACCACATACACCACCGTCACGTTACAGGTTTCCAG
AACGTAACCGTATTATTAGTGGTGTGTCGAAAGGTGTATTTGTTACCGAGGCGAAAGAAAAAAGTGGGGCGCTTATAACG
ATTGATCAAGCATTAGAGCAAAATCGTAACGTATATGTTTTGCCAGGAACGATGTTTGACACACATACAAAAGGGAATTT
AATGCGAGCAAAAGAAGGTGCAGAAATAGTATTAGGTGCGGCTGATATTTTAAAAGATTACGAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

100

0.51
  dprA Staphylococcus aureus N315

50.69

100

0.51

Multiple sequence alignment