Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ATY39_RS15045 Genome accession   NZ_CP014806
Coordinates   2988641..2989195 (-) Length   184 a.a.
NCBI ID   WP_066791172.1    Uniprot ID   -
Organism   Rummeliibacillus stabekisii strain PP9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2983641..2994195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS15025 (ATY39_15025) rplI 2984681..2985130 (-) 450 WP_066791164.1 50S ribosomal protein L9 -
  ATY39_RS15030 (ATY39_15030) - 2985127..2987103 (-) 1977 WP_066791166.1 DHH family phosphoesterase -
  ATY39_RS15035 (ATY39_15035) - 2987117..2988058 (-) 942 WP_066791168.1 YybS family protein -
  ATY39_RS15040 (ATY39_15040) rpsR 2988353..2988589 (-) 237 WP_066791170.1 30S ribosomal protein S18 -
  ATY39_RS15045 (ATY39_15045) ssbA 2988641..2989195 (-) 555 WP_066791172.1 single-stranded DNA-binding protein Machinery gene
  ATY39_RS15050 (ATY39_15050) rpsF 2989237..2989527 (-) 291 WP_066791174.1 30S ribosomal protein S6 -
  ATY39_RS15055 (ATY39_15055) ychF 2989737..2990837 (-) 1101 WP_066791178.1 redox-regulated ATPase YchF -
  ATY39_RS15060 (ATY39_15060) - 2990914..2991129 (-) 216 WP_066791180.1 DUF951 domain-containing protein -
  ATY39_RS15065 (ATY39_15065) - 2991132..2992013 (-) 882 WP_066791182.1 mechanosensitive ion channel family protein -
  ATY39_RS15070 (ATY39_15070) yyaC 2992087..2992683 (+) 597 WP_066791183.1 spore protease YyaC -
  ATY39_RS15075 (ATY39_15075) - 2992642..2993346 (-) 705 WP_066791184.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20183.02 Da        Isoelectric Point: 5.2492

>NTDB_id=174412 ATY39_RS15045 WP_066791172.1 2988641..2989195(-) (ssbA) [Rummeliibacillus stabekisii strain PP9]
MINRVVLVGRLTKDPELRYTPNGVAVARFTLAVNRTFSNQQGEKQADFINCVVWRKQAENTANFLHKGSLAGIEGRIQTG
SFEGQDGKRVYTTEVVADSVQFLEPRSATGDRPAPSQSYGGQPSYGGGSQYGSASQEGNYQQPSYQQNHSPNQQNYTRVD
EDPFAPMNNNGGGKVDVTEDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=174412 ATY39_RS15045 WP_066791172.1 2988641..2989195(-) (ssbA) [Rummeliibacillus stabekisii strain PP9]
ATGATTAACCGCGTCGTATTAGTCGGAAGGCTAACAAAAGATCCGGAACTTCGCTACACACCAAATGGTGTAGCAGTTGC
TCGTTTTACATTAGCTGTGAATAGAACATTTTCTAATCAACAAGGTGAAAAGCAAGCCGACTTCATCAACTGTGTTGTTT
GGCGCAAACAAGCTGAAAATACTGCAAACTTCTTGCATAAAGGAAGCCTTGCAGGGATTGAAGGCCGCATCCAAACAGGC
AGTTTTGAAGGTCAAGACGGCAAGCGTGTATACACAACAGAAGTGGTGGCAGATAGTGTCCAATTCTTAGAACCACGAAG
TGCAACTGGAGATCGTCCGGCACCAAGCCAATCGTATGGCGGTCAACCGTCTTACGGTGGTGGCAGCCAATATGGCAGTG
CTTCTCAAGAAGGGAATTATCAACAGCCATCATATCAACAGAATCACTCACCTAATCAGCAAAACTATACACGTGTAGAT
GAAGATCCATTTGCGCCAATGAATAACAATGGCGGAGGGAAAGTCGACGTAACAGAAGACGACCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.08

100

0.56
  ssb Latilactobacillus sakei subsp. sakei 23K

48.925

100

0.495

Multiple sequence alignment