Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BaDB11_RS14565 Genome accession   NZ_CP014795
Coordinates   2758814..2759212 (-) Length   132 a.a.
NCBI ID   WP_003178808.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2753814..2764212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS14540 (BaDB11_02927) - 2754146..2754829 (-) 684 WP_003178799.1 amino acid ABC transporter permease -
  BaDB11_RS14545 (BaDB11_02928) - 2754841..2755716 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  BaDB11_RS14550 (BaDB11_02929) - 2755900..2756451 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  BaDB11_RS14555 - 2756548..2757269 (+) 722 Protein_2850 AAA family ATPase -
  BaDB11_RS14560 (BaDB11_02931) - 2757339..2758775 (+) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  BaDB11_RS14565 (BaDB11_02932) nin/comJ 2758814..2759212 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  BaDB11_RS14570 (BaDB11_02933) nucA/comI 2759230..2759676 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BaDB11_RS22465 - 2759943..2760146 (+) 204 WP_003178812.1 hypothetical protein -
  BaDB11_RS14575 (BaDB11_02934) - 2760152..2760955 (+) 804 WP_025805273.1 serine/threonine protein kinase -
  BaDB11_RS14580 (BaDB11_02935) - 2760975..2762678 (-) 1704 WP_003178816.1 methyl-accepting chemotaxis protein -
  BaDB11_RS14585 (BaDB11_02936) - 2762794..2763534 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14990.03 Da        Isoelectric Point: 5.6435

>NTDB_id=174333 BaDB11_RS14565 WP_003178808.1 2758814..2759212(-) (nin/comJ) [Bacillus licheniformis strain SCK B11]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDIKRGYTTGEHAVSFEALENTASSVEVRLNAQKQVPSFNRRVTVPF
EVLYDGVEIASVLSKKLTCDIPQGAYQLTCYTIMPDHSGTAQITYLLDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=174333 BaDB11_RS14565 WP_003178808.1 2758814..2759212(-) (nin/comJ) [Bacillus licheniformis strain SCK B11]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAGAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATTAAAAGAGGATATACAACGGGAGAGCACGCGGTCTCGTTTGAAGCTCTCGAAA
ACACGGCATCTTCAGTAGAAGTCCGTTTGAATGCCCAAAAACAGGTGCCCTCCTTCAACAGGCGCGTCACCGTTCCTTTC
GAAGTGCTTTATGACGGGGTAGAAATTGCAAGCGTCCTATCCAAGAAATTGACATGCGATATTCCGCAAGGCGCCTATCA
GCTGACATGCTATACAATAATGCCTGATCACAGCGGCACTGCACAGATCACCTATCTTCTCGATTTTAAACAGGCTTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485

Multiple sequence alignment