Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BaDB11_RS14570 Genome accession   NZ_CP014795
Coordinates   2759230..2759676 (-) Length   148 a.a.
NCBI ID   WP_003178810.1    Uniprot ID   A0A8B5YEZ5
Organism   Bacillus licheniformis strain SCK B11     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2754230..2764676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS14545 (BaDB11_02928) - 2754841..2755716 (-) 876 WP_003178801.1 transporter substrate-binding domain-containing protein -
  BaDB11_RS14550 (BaDB11_02929) - 2755900..2756451 (+) 552 WP_003178803.1 NAD(P)H-dependent oxidoreductase -
  BaDB11_RS14555 - 2756548..2757269 (+) 722 Protein_2850 AAA family ATPase -
  BaDB11_RS14560 (BaDB11_02931) - 2757339..2758775 (+) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  BaDB11_RS14565 (BaDB11_02932) nin/comJ 2758814..2759212 (-) 399 WP_003178808.1 competence protein ComJ Regulator
  BaDB11_RS14570 (BaDB11_02933) nucA/comI 2759230..2759676 (-) 447 WP_003178810.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BaDB11_RS22465 - 2759943..2760146 (+) 204 WP_003178812.1 hypothetical protein -
  BaDB11_RS14575 (BaDB11_02934) - 2760152..2760955 (+) 804 WP_025805273.1 serine/threonine protein kinase -
  BaDB11_RS14580 (BaDB11_02935) - 2760975..2762678 (-) 1704 WP_003178816.1 methyl-accepting chemotaxis protein -
  BaDB11_RS14585 (BaDB11_02936) - 2762794..2763534 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16224.12 Da        Isoelectric Point: 4.9954

>NTDB_id=174334 BaDB11_RS14570 WP_003178810.1 2759230..2759676(-) (nucA/comI) [Bacillus licheniformis strain SCK B11]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAD
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=174334 BaDB11_RS14570 WP_003178810.1 2759230..2759676(-) (nucA/comI) [Bacillus licheniformis strain SCK B11]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5YEZ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment