Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BaDB11_RS04185 Genome accession   NZ_CP014795
Coordinates   745909..746202 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740909..751202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS04140 (BaDB11_00841) tasA 741291..742085 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  BaDB11_RS04145 (BaDB11_00842) sipW 742159..742743 (-) 585 WP_003183449.1 signal peptidase I SipW -
  BaDB11_RS04150 (BaDB11_00843) tapA 742740..743468 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  BaDB11_RS04155 (BaDB11_00844) - 743745..744065 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  BaDB11_RS04160 (BaDB11_00845) - 744089..744271 (-) 183 WP_003183456.1 YqzE family protein -
  BaDB11_RS04165 (BaDB11_00846) comGG 744360..744725 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  BaDB11_RS04170 (BaDB11_00847) comGF 744738..745226 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  BaDB11_RS04175 comGE 745135..745482 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  BaDB11_RS04180 (BaDB11_00848) comGD 745466..745903 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  BaDB11_RS04185 (BaDB11_00849) comGC 745909..746202 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  BaDB11_RS04190 (BaDB11_00850) comGB 746216..747250 (-) 1035 WP_075218359.1 competence type IV pilus assembly protein ComGB Machinery gene
  BaDB11_RS04195 (BaDB11_00851) comGA 747240..748304 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  BaDB11_RS04200 (BaDB11_00852) - 748461..749300 (-) 840 WP_003183480.1 STAS domain-containing protein -
  BaDB11_RS04210 - 749558..749917 (-) 360 Protein_845 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BaDB11_RS04215 (BaDB11_00854) - 750126..750371 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  BaDB11_RS04220 (BaDB11_00855) - 750409..751047 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=174296 BaDB11_RS04185 WP_003183466.1 745909..746202(-) (comGC) [Bacillus licheniformis strain SCK B11]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=174296 BaDB11_RS04185 WP_003183466.1 745909..746202(-) (comGC) [Bacillus licheniformis strain SCK B11]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment