Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   B34_RS11930 Genome accession   NZ_CP014793
Coordinates   2200310..2201044 (-) Length   244 a.a.
NCBI ID   WP_011198352.1    Uniprot ID   A0A415J866
Organism   Bacillus licheniformis strain SCDB 34     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2195310..2206044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS11895 (B34_02413) fliW 2195461..2195892 (-) 432 WP_011198351.1 flagellar assembly protein FliW -
  B34_RS11900 (B34_02414) - 2195914..2196480 (-) 567 WP_009329670.1 DUF6470 family protein -
  B34_RS11905 (B34_02415) flgL 2196530..2197441 (-) 912 WP_003185705.1 flagellar hook-associated protein FlgL -
  B34_RS11910 (B34_02416) flgK 2197452..2198975 (-) 1524 WP_003185709.1 flagellar hook-associated protein FlgK -
  B34_RS11915 (B34_02417) - 2198991..2199467 (-) 477 WP_003185711.1 flagellar protein FlgN -
  B34_RS11920 (B34_02418) flgM 2199486..2199752 (-) 267 WP_003185713.1 flagellar biosynthesis anti-sigma factor FlgM -
  B34_RS11925 (B34_02419) - 2199832..2200251 (-) 420 WP_003185715.1 TIGR03826 family flagellar region protein -
  B34_RS11930 comFC 2200310..2201044 (-) 735 WP_011198352.1 amidophosphoribosyltransferase Machinery gene
  B34_RS11935 (B34_02420) - 2201001..2201285 (-) 285 WP_003185718.1 late competence development ComFB family protein -
  B34_RS11940 (B34_02421) comFA 2201340..2202734 (-) 1395 WP_003185720.1 DEAD/DEAH box helicase Machinery gene
  B34_RS11945 (B34_02422) - 2202855..2203697 (-) 843 WP_003185726.1 DegV family protein -
  B34_RS11950 (B34_02423) degU 2203817..2204506 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  B34_RS11955 (B34_02424) degS 2204588..2205745 (-) 1158 WP_003185733.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27811.22 Da        Isoelectric Point: 9.4827

>NTDB_id=174177 B34_RS11930 WP_011198352.1 2200310..2201044(-) (comFC) [Bacillus licheniformis strain SCDB 34]
MKTRFAQAIEEGGNKLNCLICAAPLLHSLSWHSFFFLRSEEKICRECKENFIEIKGTVCPKCGRPQGSEELCGDCAKWEA
NPLTRSLLRQNRSVYLYNTFMKEVLARFKFRGDAELVFAFAPSFISAFQQYFRRSPSVLVPIPLSEERKAERGFNQAERL
ASLLQIPVIHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDVILIDDLYTTGATLHHAADCLMTSGEAKSVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=174177 B34_RS11930 WP_011198352.1 2200310..2201044(-) (comFC) [Bacillus licheniformis strain SCDB 34]
ATGAAAACCCGCTTTGCGCAAGCAATCGAAGAGGGAGGGAATAAACTGAATTGTTTAATTTGTGCAGCGCCTCTTTTACA
TTCTCTCTCATGGCATTCTTTTTTCTTTTTACGATCAGAAGAGAAAATATGCAGGGAATGTAAAGAGAACTTTATCGAGA
TCAAAGGAACCGTATGCCCTAAGTGCGGACGGCCACAGGGGAGCGAAGAGCTGTGCGGTGACTGCGCAAAATGGGAGGCC
AATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTTTATCTCTACAATACTTTCATGAAAGAAGTCCTTGCCCG
TTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCCCCTTCATTTATCAGCGCTTTTCAACAATACTTCCGCC
GCAGCCCGTCTGTTTTAGTTCCGATACCTCTCAGTGAAGAACGTAAAGCGGAGAGGGGATTTAATCAGGCGGAGCGTCTT
GCTTCCTTATTACAAATACCCGTTATTCATCCCTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGGAAAGA
GCGAATTAAGCCAAAAACCGTTTTTAGAACCGAAAAGGGGTCAGTAAAGAATCTGGATGTCATATTGATTGACGACTTGT
ATACGACAGGAGCGACCCTTCATCATGCCGCTGATTGCCTGATGACATCCGGAGAAGCAAAATCTGTATCATCATATACA
TTAATTAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(151-242)

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A415J866

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

52.321

97.131

0.508

Multiple sequence alignment