Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   B34_RS09795 Genome accession   NZ_CP014793
Coordinates   1798668..1799306 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain SCDB 34     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793668..1804306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS09760 (B34_01975) - 1794855..1795286 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  B34_RS09765 (B34_01976) - 1795286..1795627 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  B34_RS09770 (B34_01977) - 1795620..1797098 (+) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  B34_RS09775 (B34_01978) - 1797104..1797580 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  B34_RS09780 (B34_01979) - 1797580..1797864 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  B34_RS09785 (B34_01980) mnhG 1797848..1798222 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  B34_RS09790 (B34_01981) - 1798262..1798651 (-) 390 WP_009329508.1 hotdog fold thioesterase -
  B34_RS09795 (B34_01982) comA 1798668..1799306 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  B34_RS09800 (B34_01983) comP 1799393..1801714 (-) 2322 WP_026080865.1 ATP-binding protein Regulator
  B34_RS09805 (B34_01984) comX 1801754..1801918 (-) 165 WP_011198251.1 competence pheromone ComX -
  B34_RS09810 (B34_01985) - 1801933..1802802 (-) 870 WP_011198252.1 polyprenyl synthetase family protein -
  B34_RS09815 (B34_01986) degQ 1802991..1803131 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  B34_RS09825 (B34_01988) - 1803617..1803964 (+) 348 WP_009329512.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=174170 B34_RS09795 WP_003184849.1 1798668..1799306(-) (comA) [Bacillus licheniformis strain SCDB 34]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=174170 B34_RS09795 WP_003184849.1 1798668..1799306(-) (comA) [Bacillus licheniformis strain SCDB 34]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment