Detailed information NTG0174159

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BFL20_RS20210
• Genome accession: NZ_CP018237
• Coordinates: 3618656..3619648 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 155
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3613656..3624648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFL20_RS20185 (BFL20_19935)	pphB	3615018..3615674 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
BFL20_RS20190 (BFL20_19940)	-	3615715..3615951 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
BFL20_RS20195 (BFL20_19945)	-	3615962..3617389 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
BFL20_RS20200 (BFL20_19950)	-	3617389..3617982 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
BFL20_RS20205 (BFL20_19955)	-	3618129..3618536 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
BFL20_RS20210 (BFL20_19960)	rpoS	3618656..3619648 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
BFL20_RS20215 (BFL20_19965)	nlpD	3619711..3620805 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
BFL20_RS20220 (BFL20_19970)	pcm	3620990..3621616 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
BFL20_RS20225 (BFL20_19975)	surE	3621610..3622371 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
BFL20_RS20230 (BFL20_19980)	truD	3622352..3623401 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
BFL20_RS20235 (BFL20_19985)	ispF	3623398..3623877 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BFL20_RS20240 (BFL20_19990)	ispD	3623877..3624587 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=174159 BFL20_RS20210 WP_000081550.1 3618656..3619648(-) (rpoS) [Escherichia coli strain 155]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=174159 BFL20_RS20210 WP_000081550.1 3618656..3619648(-) (rpoS) [Escherichia coli strain 155]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACAGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715