Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKU_RS10050 Genome accession   NZ_CP014791
Coordinates   2026285..2026680 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MCRF184     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2021285..2031680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKU_RS10025 (CKU_1851) thiE 2021883..2022524 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  CKU_RS10030 (CKU_1852) thiM 2022526..2023317 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  CKU_RS10035 (CKU_1853) thiD 2023301..2024131 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CKU_RS10040 (CKU_1854) tenA 2024124..2024813 (-) 690 WP_000396063.1 thiaminase II -
  CKU_RS10045 (CKU_1856) sceD 2025201..2025896 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  CKU_RS10050 (CKU_1857) ssb 2026285..2026680 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  CKU_RS10055 (CKU_1858) - 2026874..2027314 (+) 441 WP_000846751.1 YwpF-like family protein -
  CKU_RS10060 (CKU_1859) fabZ 2027370..2027810 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CKU_RS10065 (CKU_1860) murA 2027844..2029109 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CKU_RS10070 (CKU_1861) - 2029220..2029453 (-) 234 WP_000384523.1 DUF1146 family protein -
  CKU_RS10080 (CKU_1862) - 2030050..2030454 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=174139 CKU_RS10050 WP_000932694.1 2026285..2026680(-) (ssb) [Staphylococcus aureus strain MCRF184]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=174139 CKU_RS10050 WP_000932694.1 2026285..2026680(-) (ssb) [Staphylococcus aureus strain MCRF184]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment