Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CKU_RS04420 Genome accession   NZ_CP014791
Coordinates   909511..910497 (+) Length   328 a.a.
NCBI ID   WP_000959271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MCRF184     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 904511..915497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKU_RS04395 (CKU_0829) opp4B 904723..905685 (+) 963 WP_000593421.1 oligopeptide ABC transporter permease -
  CKU_RS04400 (CKU_0830) opp4C 905697..906578 (+) 882 WP_001180265.1 oligopeptide ABC transporter permease -
  CKU_RS04405 (CKU_0831) trpS 906620..907609 (-) 990 WP_000448938.1 tryptophan--tRNA ligase -
  CKU_RS04410 (CKU_0832) spxA 907904..908299 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  CKU_RS04415 (CKU_0833) mecA 908671..909390 (+) 720 WP_001217728.1 adaptor protein MecA -
  CKU_RS04420 (CKU_0834) coiA 909511..910497 (+) 987 WP_000959271.1 competence protein CoiA Machinery gene
  CKU_RS04425 (CKU_0835) pepF 910545..912353 (+) 1809 WP_061869683.1 oligoendopeptidase F -
  CKU_RS04430 (CKU_0836) yjbH 912813..913619 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  CKU_RS04435 (CKU_0837) - 913642..914007 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  CKU_RS04440 (CKU_0838) - 914111..914704 (-) 594 WP_061869684.1 CYTH domain-containing protein -
  CKU_RS04445 (CKU_0839) - 914890..915237 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38849.49 Da        Isoelectric Point: 9.7732

>NTDB_id=174113 CKU_RS04420 WP_000959271.1 909511..910497(+) (coiA) [Staphylococcus aureus strain MCRF184]
MLVALNEEKERVLATTALRKIKYFCPVCGKQVILKRGLKVISHFAHKHLTEQKCFNNESFKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSIFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSNR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=174113 CKU_RS04420 WP_000959271.1 909511..910497(+) (coiA) [Staphylococcus aureus strain MCRF184]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGATAAAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAACGGAACAAAAAT
GTTTTAATAATGAATCGTTTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAACCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATATTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATACTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAAATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

96.037

100

0.96
  coiA Staphylococcus aureus MW2

95.732

100

0.957

Multiple sequence alignment