Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CKU_RS02520 Genome accession   NZ_CP014791
Coordinates   531333..531902 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MCRF184     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 526333..536902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKU_RS02495 (CKU_0463) cysE 527546..528193 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  CKU_RS02500 (CKU_0464) cysS 528177..529577 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  CKU_RS02505 (CKU_0465) - 529570..529974 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  CKU_RS02510 (CKU_0466) rlmB 529982..530728 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CKU_RS02515 (CKU_0467) - 530728..531252 (+) 525 WP_000664731.1 NYN domain-containing protein -
  CKU_RS02520 (CKU_0468) sigH 531333..531902 (+) 570 WP_000872878.1 sigma-70 family RNA polymerase sigma factor Regulator
  CKU_RS13415 (CKU_0469) rpmG 532017..532160 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  CKU_RS02525 (CKU_0470) secE 532216..532398 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CKU_RS02530 (CKU_0471) nusG 532411..532959 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CKU_RS02535 (CKU_0472) rplK 533140..533562 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  CKU_RS02540 (CKU_0473) rplA 533770..534462 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  CKU_RS02545 (CKU_0474) rplJ 534734..535234 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  CKU_RS02550 (CKU_0475) rplL 535277..535645 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  CKU_RS02555 (CKU_0476) - 535820..536428 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=174108 CKU_RS02520 WP_000872878.1 531333..531902(+) (sigH) [Staphylococcus aureus strain MCRF184]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=174108 CKU_RS02520 WP_000872878.1 531333..531902(+) (sigH) [Staphylococcus aureus strain MCRF184]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment