Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   A1R12_RS17535 Genome accession   NZ_CP014783
Coordinates   3638258..3638377 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3633258..3643377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS17510 (A1R12_17510) - 3633695..3634123 (-) 429 WP_060673887.1 DUF1934 domain-containing protein -
  A1R12_RS17515 (A1R12_17515) - 3634277..3634789 (+) 513 Protein_3481 bacteriocin biosynthesis protein AlbG -
  A1R12_RS17520 (A1R12_17520) - 3634796..3635503 (-) 708 WP_061890880.1 YncE family protein -
  A1R12_RS17525 (A1R12_17525) - 3635543..3636898 (-) 1356 WP_061890881.1 YncE family protein -
  A1R12_RS17530 (A1R12_17530) rapF 3637129..3638274 (+) 1146 WP_081112076.1 tetratricopeptide repeat protein Regulator
  A1R12_RS17535 (A1R12_17535) phrF 3638258..3638377 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  A1R12_RS17540 (A1R12_17540) - 3638575..3638778 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  A1R12_RS17545 (A1R12_17545) - 3638792..3638995 (+) 204 WP_007407641.1 hypothetical protein -
  A1R12_RS17550 (A1R12_17550) - 3639030..3639215 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  A1R12_RS17555 (A1R12_17555) - 3639401..3639682 (+) 282 WP_045209208.1 hypothetical protein -
  A1R12_RS17560 (A1R12_17560) - 3639726..3640238 (+) 513 WP_060673881.1 stage II sporulation protein M -
  A1R12_RS17570 (A1R12_17570) - 3640829..3641047 (-) 219 WP_060673879.1 LuxR C-terminal-related transcriptional regulator -
  A1R12_RS17575 (A1R12_17575) speB 3641215..3642087 (-) 873 WP_007407646.1 agmatinase -
  A1R12_RS17580 (A1R12_17580) speE 3642146..3642976 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=174008 A1R12_RS17535 WP_015240778.1 3638258..3638377(+) (phrF) [Bacillus amyloliquefaciens strain B15]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=174008 A1R12_RS17535 WP_015240778.1 3638258..3638377(+) (phrF) [Bacillus amyloliquefaciens strain B15]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment