Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   A1R12_RS16620 Genome accession   NZ_CP014783
Coordinates   3452927..3453616 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain B15     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3447927..3458616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS16585 (A1R12_16585) - 3448125..3448607 (-) 483 WP_015418332.1 flagellar protein FlgN -
  A1R12_RS16590 (A1R12_16590) flgM 3448622..3448888 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A1R12_RS16595 (A1R12_16595) - 3448958..3449377 (-) 420 WP_061890853.1 TIGR03826 family flagellar region protein -
  A1R12_RS16600 (A1R12_16600) comFC 3449451..3450140 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  A1R12_RS16605 (A1R12_16605) - 3450146..3450430 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  A1R12_RS16610 (A1R12_16610) comFA 3450488..3451873 (-) 1386 WP_061890854.1 DEAD/DEAH box helicase Machinery gene
  A1R12_RS16615 (A1R12_16615) - 3451981..3452829 (-) 849 WP_003151387.1 DegV family protein -
  A1R12_RS16620 (A1R12_16620) degU 3452927..3453616 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A1R12_RS16625 (A1R12_16625) degS 3453693..3454856 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  A1R12_RS16630 (A1R12_16630) - 3455079..3455726 (+) 648 WP_007614107.1 YigZ family protein -
  A1R12_RS16635 (A1R12_16635) - 3455731..3456945 (+) 1215 WP_014419013.1 LCP family protein -
  A1R12_RS16640 (A1R12_16640) - 3457035..3458111 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=174002 A1R12_RS16620 WP_003219701.1 3452927..3453616(-) (degU) [Bacillus amyloliquefaciens strain B15]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=174002 A1R12_RS16620 WP_003219701.1 3452927..3453616(-) (degU) [Bacillus amyloliquefaciens strain B15]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAACGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATTCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment