Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   A1R12_RS16600 Genome accession   NZ_CP014783
Coordinates   3449451..3450140 (-) Length   229 a.a.
NCBI ID   WP_196493397.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3444451..3455140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS16565 (A1R12_16565) fliW 3444542..3444973 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  A1R12_RS16570 (A1R12_16570) - 3445003..3445572 (-) 570 WP_007407476.1 DUF6470 family protein -
  A1R12_RS16575 (A1R12_16575) flgL 3445663..3446580 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  A1R12_RS16580 (A1R12_16580) flgK 3446592..3448109 (-) 1518 WP_015418331.1 flagellar hook-associated protein FlgK -
  A1R12_RS16585 (A1R12_16585) - 3448125..3448607 (-) 483 WP_015418332.1 flagellar protein FlgN -
  A1R12_RS16590 (A1R12_16590) flgM 3448622..3448888 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  A1R12_RS16595 (A1R12_16595) - 3448958..3449377 (-) 420 WP_061890853.1 TIGR03826 family flagellar region protein -
  A1R12_RS16600 (A1R12_16600) comFC 3449451..3450140 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  A1R12_RS16605 (A1R12_16605) - 3450146..3450430 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  A1R12_RS16610 (A1R12_16610) comFA 3450488..3451873 (-) 1386 WP_061890854.1 DEAD/DEAH box helicase Machinery gene
  A1R12_RS16615 (A1R12_16615) - 3451981..3452829 (-) 849 WP_003151387.1 DegV family protein -
  A1R12_RS16620 (A1R12_16620) degU 3452927..3453616 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  A1R12_RS16625 (A1R12_16625) degS 3453693..3454856 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25245.83 Da        Isoelectric Point: 8.0779

>NTDB_id=174000 A1R12_RS16600 WP_196493397.1 3449451..3450140(-) (comFC) [Bacillus amyloliquefaciens strain B15]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=174000 A1R12_RS16600 WP_196493397.1 3449451..3450140(-) (comFC) [Bacillus amyloliquefaciens strain B15]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment