Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   A1R12_RS14620 Genome accession   NZ_CP014783
Coordinates   3041779..3042423 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain B15     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3036779..3047423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS14585 (A1R12_14585) - 3037964..3038395 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  A1R12_RS14590 (A1R12_14590) - 3038395..3038736 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  A1R12_RS14595 (A1R12_14595) - 3038729..3040210 (+) 1482 WP_015418103.1 Na+/H+ antiporter subunit D -
  A1R12_RS14600 (A1R12_14600) - 3040216..3040692 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  A1R12_RS14605 (A1R12_14605) - 3040692..3040976 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  A1R12_RS14610 (A1R12_14610) mnhG 3040960..3041334 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  A1R12_RS14615 (A1R12_14615) - 3041374..3041757 (-) 384 WP_053574130.1 hotdog fold thioesterase -
  A1R12_RS14620 (A1R12_14620) comA 3041779..3042423 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  A1R12_RS14625 (A1R12_14625) comP 3042504..3044807 (-) 2304 WP_040238945.1 histidine kinase Regulator
  A1R12_RS14635 (A1R12_14635) comQ 3044960..3045946 (-) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  A1R12_RS14640 (A1R12_14640) degQ 3046077..3046217 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  A1R12_RS14645 (A1R12_14645) - 3046680..3047021 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=173994 A1R12_RS14620 WP_003152052.1 3041779..3042423(-) (comA) [Bacillus amyloliquefaciens strain B15]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=173994 A1R12_RS14620 WP_003152052.1 3041779..3042423(-) (comA) [Bacillus amyloliquefaciens strain B15]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment