Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   A1R12_RS02025 Genome accession   NZ_CP014783
Coordinates   405358..406311 (+) Length   317 a.a.
NCBI ID   WP_061890422.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400358..411311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS02005 (A1R12_02005) - 400415..401848 (+) 1434 WP_162303988.1 sensor histidine kinase -
  A1R12_RS02010 (A1R12_02010) rapC 401990..403138 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  A1R12_RS02015 (A1R12_02015) phrC 403122..403241 (+) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  A1R12_RS19420 - 403390..403500 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  A1R12_RS02020 (A1R12_02020) - 403580..404944 (-) 1365 WP_015416811.1 aspartate kinase -
  A1R12_RS02025 (A1R12_02025) ceuB 405358..406311 (+) 954 WP_061890422.1 ABC transporter permease Machinery gene
  A1R12_RS02030 (A1R12_02030) - 406301..407248 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  A1R12_RS02035 (A1R12_02035) - 407242..408000 (+) 759 WP_015416812.1 ABC transporter ATP-binding protein -
  A1R12_RS02040 (A1R12_02040) - 408022..408966 (+) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  A1R12_RS02045 (A1R12_02045) - 409008..410432 (-) 1425 WP_015416813.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34931.21 Da        Isoelectric Point: 9.6741

>NTDB_id=173946 A1R12_RS02025 WP_061890422.1 405358..406311(+) (ceuB) [Bacillus amyloliquefaciens strain B15]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFSSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=173946 A1R12_RS02025 WP_061890422.1 405358..406311(+) (ceuB) [Bacillus amyloliquefaciens strain B15]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTTCGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTTCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment