Detailed information NTG0173944

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: A1R12_RS02010
• Genome accession: NZ_CP014783
• Coordinates: 401990..403138 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain B15
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 396990..408138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A1R12_RS01990 (A1R12_01990)	-	397398..398081 (-)	684	WP_015416808.1	ABC transporter ATP-binding protein	-
A1R12_RS01995 (A1R12_01995)	-	398096..399532 (-)	1437	WP_015416809.1	ABC transporter permease	-
A1R12_RS02000 (A1R12_02000)	-	399745..400428 (+)	684	WP_007410267.1	response regulator transcription factor	-
A1R12_RS02005 (A1R12_02005)	-	400415..401848 (+)	1434	WP_162303988.1	sensor histidine kinase	-
A1R12_RS02010 (A1R12_02010)	rapC	401990..403138 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
A1R12_RS02015 (A1R12_02015)	phrC	403122..403241 (+)	120	WP_031378677.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
A1R12_RS19420	-	403390..403500 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
A1R12_RS02020 (A1R12_02020)	-	403580..404944 (-)	1365	WP_015416811.1	aspartate kinase	-
A1R12_RS02025 (A1R12_02025)	ceuB	405358..406311 (+)	954	WP_061890422.1	ABC transporter permease	Machinery gene
A1R12_RS02030 (A1R12_02030)	-	406301..407248 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
A1R12_RS02035 (A1R12_02035)	-	407242..408000 (+)	759	WP_015416812.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=173944 A1R12_RS02010 WP_007410270.1 401990..403138(+) (rapC) [Bacillus amyloliquefaciens strain B15]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=173944 A1R12_RS02010 WP_007410270.1 401990..403138(+) (rapC) [Bacillus amyloliquefaciens strain B15]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568