Detailed information NTG0173944

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BSO20_RS18790
• Genome accession: NZ_CP018200
• Coordinates: 3803934..3805202 (-)
• Length: 422 a.a.
• NCBI ID: WP_029326053.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WS-8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3798934..3810202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSO20_RS19875	-	3799135..3799305 (+)	171	WP_087920774.1	YrzK family protein	-
BSO20_RS18770 (BSO20_18780)	hisS	3799662..3800936 (+)	1275	WP_032873851.1	histidine--tRNA ligase	-
BSO20_RS18775 (BSO20_18785)	aspS	3800951..3802729 (+)	1779	WP_032873853.1	aspartate--tRNA ligase	-
BSO20_RS18785 (BSO20_18795)	-	3803055..3803819 (+)	765	WP_032873855.1	ThiF family adenylyltransferase	-
BSO20_RS18790 (BSO20_18800)	rarA	3803934..3805202 (-)	1269	WP_029326053.1	replication-associated recombination protein A	Machinery gene
BSO20_RS18795 (BSO20_18805)	cymR	3805397..3805813 (+)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BSO20_RS18800 (BSO20_18810)	-	3805832..3806971 (+)	1140	WP_032873857.1	cysteine desulfurase family protein	-
BSO20_RS18805 (BSO20_18815)	mnmA	3807008..3808123 (+)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
BSO20_RS18810 (BSO20_18820)	-	3808211..3808831 (+)	621	WP_087920803.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46646.54 Da
• Isoelectric Point: 8.5446

>NTDB_id=173944 BSO20_RS18790 WP_029326053.1 3803934..3805202(-) (rarA) [Bacillus amyloliquefaciens strain WS-8]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALKR
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTVRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=173944 BSO20_RS18790 WP_029326053.1 3803934..3805202(-) (rarA) [Bacillus amyloliquefaciens strain WS-8]
ATGAAACCACTGGCGTATCGGATGCGGCCTGCCAATATTGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACATCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGAAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCTTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCACAAGG
GTGCGGGGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGG
TCCGGATTACACGGGAAACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGAGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGAACGGGTAA
AATCGGCGATGTGCCGAAACATCTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCCGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905