Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB684_RS17095 Genome accession   NZ_CP014781
Coordinates   3305159..3305797 (-) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300159..3310797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS17060 (AB684_17060) - 3301346..3301777 (+) 432 WP_003184834.1 Na(+)/H(+) antiporter subunit B -
  AB684_RS17065 (AB684_17065) - 3301777..3302118 (+) 342 WP_003184836.1 Na(+)/H(+) antiporter subunit C -
  AB684_RS17070 (AB684_17070) - 3302111..3303589 (+) 1479 WP_003184838.1 Na+/H+ antiporter subunit D -
  AB684_RS17075 (AB684_17075) - 3303595..3304071 (+) 477 WP_003184840.1 Na+/H+ antiporter subunit E -
  AB684_RS17080 (AB684_17080) - 3304071..3304355 (+) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  AB684_RS17085 (AB684_17085) mnhG 3304339..3304713 (+) 375 WP_003184844.1 monovalent cation/H(+) antiporter subunit G -
  AB684_RS17090 (AB684_17090) - 3304753..3305142 (-) 390 WP_003184847.1 hotdog fold thioesterase -
  AB684_RS17095 (AB684_17095) comA 3305159..3305797 (-) 639 WP_003184849.1 response regulator transcription factor Regulator
  AB684_RS17100 (AB684_17100) comP 3305884..3308205 (-) 2322 WP_026080865.1 ATP-binding protein Regulator
  AB684_RS17105 (AB684_17105) comX 3308245..3308409 (-) 165 WP_011198251.1 competence pheromone ComX -
  AB684_RS17110 (AB684_17110) - 3308424..3309293 (-) 870 WP_011198252.1 polyprenyl synthetase family protein -
  AB684_RS17115 (AB684_17115) degQ 3309482..3309622 (-) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  AB684_RS17125 (AB684_17125) - 3310141..3310455 (+) 315 WP_231105283.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=173894 AB684_RS17095 WP_003184849.1 3305159..3305797(-) (comA) [Bacillus licheniformis strain HRBL-15TDI7]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=173894 AB684_RS17095 WP_003184849.1 3305159..3305797(-) (comA) [Bacillus licheniformis strain HRBL-15TDI7]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGCATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGCTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCACGGCGCCATCAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTTCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGT
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACCCAGCACGACCTCTTGACTGAAAGGGAATGCCTGATTTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCTGATGCGCTTCATTTAAGCAAGCGGTCGATCGAATACAGCTT
GACTTCCGTATTCAGCAAGCTGAATGTAGGATCAAGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGTGTACTCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778

Multiple sequence alignment